Viruses Strain name Accession No. Isolation source Country Isolation/
submitted date
DWV unknown AJ489744 Apismellifera Italy June 2002
unknown AY224602 Apismellifera France Jan 2003
PA AY292384 Apismellifera USA May 2003
AUSTRIA-1 DQ224278 Apismellifera Austria Jan 2007
Warwick-2009 GU109335 Apismellifera UK Oct 2009
VDV-1-DWV-No-5 HM067437 Apismellifera UK May 2009
VDV-1-DWV-No-9 HM067438 Apismellifera UK May 2009
Warwick HM162356 Apismellifera UK May 2009
Zriffin JF440526 Zriffin Apiary Israel Oct-2008
Chilensis A1 JQ413340 Apismellifera Chile Oct-2011
SBV Austria AF284617 Apismellifera Austria July 2000
Germany 1 AF284618 Apismellifera Austria July 2000
Rothamstead AF092924 Apismellifera UK Sep 1998
Riez2002 AY152711 Apismellifera France Sep 2002
Sophia1 R80 AY152712 Apismellifera France Sep 2002
AFSSA P12 2002 AY230517 Apismellifera France Feb 2003
CSBV-LN HM237361 Apiscerana China Jan 2009
Korea HQ322114 Apiscerana South Korea Aug-2010
AmSBV-Kor21 JQ390591 Apismellifera South Korea 2011
CQ1 JQ796779 Apiscerana China March 2012
Pennsylvania AY626247 Apismellifera USA May 2004
T73/05A EF570887 Apismellifera Denmark Apr 2007
South African AF183905 Apismellifera South African Sep 1999
Pennsylvania AY626246 Apismellifera USA May 2004
BQCV 1 DQ364629 Apismellifera Uruguay Jan 2006
POLAND-4 EF517519 Apismellifera Poland Mar 2007
D6 EU292211 Apismellifera Brazil Nov 2007
CJ3 EU375537 unknown South Korea Nov 2007
B1 FJ603458 unknown South Korea Dec 2008
R4LY 51 GU903461 Apismellifera UK Feb 2010
20W1-PA-USA-2006 HQ655459 Apismellifera USA Nov 2006
Kor1-BQCV2 JN542438 Apiscerana South Korea Aug 2011
YY1 JX149518 Apismellifera South Korea Jun 2012
KBV Canadian AF034542 Apismellifera USA Nov 1999
unknown AF035359 Apismellifera USA Nov 2000
unknown AF052567 Varroajacobsoni USA Nov 2001
941227B-1 AF085478 Varroajacobsoni USA Nov 1999
mfb6 AF135861 Apismellifera USA Mar 1999
990806B-13 AF197906 unknown Russia Nov 1999
BALL-BRL9apv AF233366 Apismellifera USA Feb 2000
unknown AY787143 Apismellifera Germany Oct 2004
Varroa AY821562 unknown Spain Nov 2004
JAK3 FJ225118 Apiscerana Jordan 2007
KBV_3_TW GU108224 Apiscerana China (Taiwan) 2008
Table 2: Reference sequences used in the phylogenetic analysis.