Array cy 3 cy 5 Line Stage Sample ID Line Stage Sample ID RBC2 vs F             fr1 F 1 dph 1 RBC2 1 dph 2.1 fr2 RBC2 1 dph 2.2 F 1 dph 2 fr2 F 1 dph 4 RBC2 1 dph 2.3 fr4 RBC2 16 wk 3 F 16 wk 4 fr5 F 16 wk 5 RBC2 16 wk 9 fr6 RBC2 16 wk 14 F 16 wk 6 1 dph vs 16 wk             dw1 F 16 wk 4 F 1 dph 1 dw2 F 1 dph 2 F 16 wk 5 dw3 F 16 wk 6 F 1 dph 4 dw4 RBC2 1 dph 2.1 RBC2 16 wk 3 dw5 RBC2 16 wk 9 RBC2 1 dph 2.2 dw6 RBC2 1 dph 2.3 RBC2 16 wk 14

Table 1: Experimental design of microarray experiments. For each array, dye (cy3 or cy5), line, stage, and sample are given.