Sr. Primer Molecular wt. range (bp) Chr. No. Motif No. of Polymor. Bands No. of mono. Band Polymor-phism % Diversity in value of PIC Marker Index
SSR
1 RM-235 700-3000 12 (CT)24 6 0 100% 0.958 5.875
2 RM-222 200-8000 10 (CT)18 2 0 100% 0.962 4.662
3 RM-236 400-700 2 (CT)18 2 0 100% 0.97 3.862
4 RM-242 500-1000 9 (CT)26 2 0 100% 0.976 3.394
5 RM-247 400-800 12 (CT)16 3 0 100% 0.982 2.728
6 RM-254 200-700 11 TC)6ATT(CT)11 1 0 100% 0.987 1.464
7 RM-253 100-200 6 (GA)25 2 0 100% 0.982 1.932
8 RM-256 100-280 8 (CT)21 2 0 100% 0.911 0.132
9 RM-263 100-240 2 (CT)34 2 0 100% 0.915 1.131
10 RM-264 100-200 8 (GA)27 1 1 50% 0.961 4.198
Avg.=0.9718
S.No. Primer Molecular wt. range (bp) No. of Polymor. bands No. of monomor. bands Polymor-phism % PIC Value Marker Index/ Resolving Power
RAPD
1 OPF-13 300-1400 4 2 66.6% 0.9925 1.43
2 OPC-15 500-900 7 0 100% 0.982 1.8
3 OPD-08 200-1700 7 0 100% 0.811 1.866
4 OPF-14 300-700 6 0 100% 0.979 1.93
5 OPF06 400-1400 6 0 100% 0.986 1.732
6 OPJ-08 100-900 3 0 100% 0.985 1.32
7 OPC-07 500-1800 4 0 100% 0.975 2.052
8 OPF-17 100-1200 3 0 100% 0.981 2.061
9 OPJ-13 400-900 4 1 80% 0.977 2.066
10 OPK-11 400-900 5 0 100% 0.967 2
ISSR Avg.=.9635 
1 ISSR1 200-1100 6 0 100% 0.951 5.24
2 ISSR2 200-1000 7 1 87.5% 0.9167 8.366
3 ISSR3 200-900 2 0 100% 0.971 1.6
4 ISSR4 200-900 8 2 80% 0.912 7.926
5 ISSR5 200-1000 6 2 75% 0.8791 4.06
6 ISSR6 100-900 9 0 100% 0.9916 7.786
7 ISSR7 200-900 5 1 83.33% 0.966 3.326
8 ISSR8 200-1000 7 0 100% 0.941 6.088
9 ISSR9 200-1500 8 0 100% 0.975 4.722
10 ISSR10 200-1000 6 1 85.7% 0.979 3.594
Avg=0.9482
Table 1: Primer code, annealing temperature, total no. of alleles, no. of Polymorphic alleles, no. of monomorphic alleles and PIC (Polymorphism Information Content)value of 30 rice genotypes.