Sr.
Primer
Molecular wt. range (bp)
Chr.
No.
Motif
No. of
Polymor. Bands
No. of mono. Band
Polymor-phism
%
Diversity in value of PIC
Marker Index
SSR
1
RM-235
700-3000
12
(CT)24
6
0
100%
0.958
5.875
2
RM-222
200-8000
10
(CT)18
2
0
100%
0.962
4.662
3
RM-236
400-700
2
(CT)18
2
0
100%
0.97
3.862
4
RM-242
500-1000
9
(CT)26
2
0
100%
0.976
3.394
5
RM-247
400-800
12
(CT)16
3
0
100%
0.982
2.728
6
RM-254
200-700
11
TC)6ATT(CT)11
1
0
100%
0.987
1.464
7
RM-253
100-200
6
(GA)25
2
0
100%
0.982
1.932
8
RM-256
100-280
8
(CT)21
2
0
100%
0.911
0.132
9
RM-263
100-240
2
(CT)34
2
0
100%
0.915
1.131
10
RM-264
100-200
8
(GA)27
1
1
50%
0.961
4.198
Avg.=0.9718
S.No.
Primer
Molecular wt. range (bp)
No. of
Polymor. bands
No. of monomor. bands
Polymor-phism %
PIC
Value
Marker Index/ Resolving Power
RAPD
1
OPF-13
300-1400
4
2
66.6%
0.9925
1.43
2
OPC-15
500-900
7
0
100%
0.982
1.8
3
OPD-08
200-1700
7
0
100%
0.811
1.866
4
OPF-14
300-700
6
0
100%
0.979
1.93
5
OPF06
400-1400
6
0
100%
0.986
1.732
6
OPJ-08
100-900
3
0
100%
0.985
1.32
7
OPC-07
500-1800
4
0
100%
0.975
2.052
8
OPF-17
100-1200
3
0
100%
0.981
2.061
9
OPJ-13
400-900
4
1
80%
0.977
2.066
10
OPK-11
400-900
5
0
100%
0.967
2
ISSR Avg.=.9635
1
ISSR1
200-1100
6
0
100%
0.951
5.24
2
ISSR2
200-1000
7
1
87.5%
0.9167
8.366
3
ISSR3
200-900
2
0
100%
0.971
1.6
4
ISSR4
200-900
8
2
80%
0.912
7.926
5
ISSR5
200-1000
6
2
75%
0.8791
4.06
6
ISSR6
100-900
9
0
100%
0.9916
7.786
7
ISSR7
200-900
5
1
83.33%
0.966
3.326
8
ISSR8
200-1000
7
0
100%
0.941
6.088
9
ISSR9
200-1500
8
0
100%
0.975
4.722
10
ISSR10
200-1000
6
1
85.7%
0.979
3.594
Avg=0.9482
Table 1:
Primer code, annealing temperature, total no. of alleles, no. of Polymorphic alleles, no. of monomorphic alleles and PIC (Polymorphism Information Content)value of 30 rice genotypes.