S. No. Reactions Description of the reactions Transition rate Rate constant values
1. Conversion of activator genes with A to activator genes without A.
2. Activation of activator gene without A to form activator gene with A.
3. Conversion of repressor promoter with R to repressor promoter without R.
4. Activation of repressor promoter without R to form repressor promoter with R.
5. Creation of mRNA of activator gene A activated by activator gene with A.
6. Creation of mRNA of activator gene A activated by activator gene without A.
7. Degradation of mRNA of activator gene A.
8. Creation of mRNA of repressor promoter R activated by repressor promoter with R.
9. Creation of mRNA of repressor promoter R activated by repressor promoter without R.
10. Degradation of mRNA of repressor promoter R.
11. Creation of repressor promoter R induced by mRNA of repressor promoter R.
12. Degradation of repressor promoter R.
13. Creation of repressor promoter R by R.
14. Creation of activator gene A induced by mRNA of activator gene A.  
15. Creation of activator gene A induced by .  
16. Creation of activator gene A induced by .  
17. Degradation of activator gene A.  
18. Activation of activator gene A to form complex C with  .  
Table 1: The biochemical reaction network of genetic oscillator, description of the reactions, transition rates and values of the rate constants used in the simulation [27].