Motif id

Sequence

Motif length

Maximum PWM score

GCR1

 CTTCC

5

7.711

GCN4

 TGACTC

6

9.482

MCB

 ACGCGT

6

9.783

PHO2

 TTAAATT

7

9.542

REB1

 TTACCCG

7

11.511

SCB

 CACGAAA

7

11.323

TBP

 TATAAAA

7

10.663

PDR1/PDR3

 TCCGCGGA

8

13.546

STE12

 ATGAAACC

8

11.469

MATalpha2

 CATGTAATT

9

14.137

repressor_of_CAR1

 AGCCGCCAA

9

12.798

MCM1

 CCCAATTAGG

10

13.914

PHO4

 CGCACGTGGT

10

12.144

ABF1

 TCACTATACACG

12

14.804

MIG1

 CCCCAGATTTTT

12

15.148

RAP1

 ACACCCATACAC

12

15.91

ROX1

 TCCATTGTTCTC

12

16.124

SWI5

 ATATCATGCTGG

12

13.796

UASPHR

 TTTTCTTCCTCG

12

14.823

XBP1

 GCCTCGAGGCGA

12

15.052

CSRE

 TTCGGATGAATGG

13

16.731

GAL4

 CGGAGCACACTCCTCCG

17

19.931

RLM1

 AGTTCTATAAATAGATTC

18

22.37

SMP1

ATGCTTCTATTTATAGCAAC

20

24.945

Table 1: List of 24 default yeast motifs taken from the SCPD.