70%

75%

80%

85%

90%

95%

100%

GCR1

1

1

1

1

1

1

9000

GCN4

1

1

1

1

1

1

10000

MCB

1

1

1

1

1

1

1

PHO2

1

1

1

1

1

1

1

TBP

1

1

1

1

1

1

1

SCB

1

1

1

1

1

1

10000

REB1

1

1

1

1

1

1

1

PDR1/PDR3

1

1

3.8

4.1

1

1

10000

STE12

1

1

1

1

1

63.4

10000

MATalpha2

1

1

1

21.3

1

141.5

10000

repressor_of_CAR1

1

1

1

1

1

435.6

10000

PHO4

1

1

1

1

149.8

1257.6

10000

MCM1

1

1

1

1

1

138.6

724

ABF1

1

1

1

294.3

869.9

5360.7

10000

RAP1

1

1

12

383.8

917.5

2920.5

10000

MIG1

1

1.4

85.8

25.4

8.6

1013.5

10000

SWI5

1.3

2.4

438.4

510.4

2371.6

3288.3

8476.4

ROX1

1

1

1

33.6

1959.6

7154.6

10000

XBP1

1

15.4

1

820.4

3206

6850.6

10000

UASPHR

1

1

1

77.8

360.7

4630.8

10000

CSRE1

1

226.3

596.1

1966.2

7006.2

8873.4

10000

GAL4

454.9

1234.7

4227.7

9805.5

10000

10000

10000

RLM1

109.3

1799.1

8174.8

7801.2

7176.4

10000

10000

SMP1

1902.5

8405.6

7491.9

9631.6

10000

10000

10000
Table 2: Average number of generations needed for motif of a given index to form. Rows represent each individual TFBS from the SCPD, whereas columns represent runs done for each motif with a given selectivity threshold (ranging from 70% to 100%).