Motif id

Motif length

Runs/1000 generations

Average run length

GCR1

5

108

9.259259

GCN4

6

279

3.584229

MCB

6

245

4.081633

PHO2

7

297

3.367003

TBP

7

330

3.030303

SCB

7

206

4.854369

REB1

7

317

3.154574

PDR1/PDR3

8

340

2.941176

STE12

8

312

3.205128

MATalpha2

9

403

2.48139

repressor_of_CAR1

9

407

2.457002

PHO4

10

398

2.512563

MCM1

10

439

2.277904

ABF1

12

478

2.09205

RAP1

12

503

1.988072

MIG1

12

477

2.096436

SWI5

12

476

2.10084

ROX1

12

477

2.096436

XBP1

12

495

2.020202

UASPHR

12

498

2.008032

CSRE1

13

467

2.141328

GAL4

17

573

1.745201

RLM1

18

581

1.72117

SMP1

20

614

1.628664

Table 3: Number of runs per 1000 generations and average run length for each of the 24 motifs selected from the SCPD database.