PromMute
ev
PPE
Length of motifs
5-20 bp
6 bp
5-9 bp
Motifs available from these species
all kinds
hypothetical
7 different species
Mutation model
random
stochastic
Mutation, selection, replication cycle per generation
yes
no
Number of occurrence of motifs
1
16
one to a few
Positioning of motif
unrestricted
restricted
Promoter length
1 Kbp
250 bp
200 bp; 2 Kbp
Real promoter sequence
Real TFBS’s used
Selection applied to parts of motifs
TFBS matching and scoring
PWM
two’s complement