PATTERN OCC1 (#PRO / #TOT) OCC2 (#PRO / #TOT) FSCORE p-value
TNCNCNGA 75(20/20) 35(18/20) 3894.25 1.76E-04
TNNTCNGA 87(20/20) 45(17/20) 3414.27 5.71E-04
CCCNNTA 70(20/20) 34(18/20) 3100.98 1.23E-03
ATANNNGG 58(20/20) 27(16/20) 3047.55 1.40E-03
GNNTGTNT 203(20/20) 66(19/20) 2728.31 3.07E-03
GCCNTNT 82(20/20) 45(19/20) 2719.77 3.13E-03
TNCNNTGT 100(20/20) 58(19/20) 2659.46 3.63E-03
GNNTGNNT 434(20/20) 277(20/20) 2480.68 5.63E-03
ATNNNGCA 76(20/20) 41(15/20) 2397.1 6.92E-03
AANGCC 78(20/20) 44(20/20) 2368.59 7.42E-03
TANNNCCC 62(20/20) 32(17/20) 2329.17 8.17E-03
ANNNATCT 113(20/20) 62(18/20) 2266.08 9.54E-03
ATNNGGC 61(20/20) 33(15/20) 2256.65 9.77E-03
TNNGNNTG 409(20/20) 267(20/20) 2226.36 1.05E-02
TGCTGNNG 39(20/20) 18(12/20) 2125.04 1.35E-02
ANGNTTNA 100(20/20) 52(15/20) 2120.31 1.37E-02
ACANNNNC 432(20/20) 284(20/20) 2106.46 1.41E-02
CNNACNCA 173(20/20) 60(20/20) 2082.1 1.50E-02
GGTNGNNA 73(20/20) 41(17/20) 2075.39 1.53E-02
GATNGG 61(20/20) 30(11/20) 2065.88 1.56E-02
Note: 1. OCC: total number of patterns within the sequences of the corresponding cluster (OCC1 represents the downregulated DEG promoter sequence set; OCC2 represents the upregulated DEG promoter sequence set) 2. PRO: total number of sequences with the pattern in the corresponding cluster 3. TOT: total number of sequences in the corresponding cluster 4. FSCORE: results of the ANOVA between the two input clusters and the background sequence set)
Table 3: Sequence patterns over-represented in the downregulated genes, but under-represented in the upregulated genes.