Medical, Pharma, Engineering, Science, Technology and Business

**Zhu Yuhong and Li Baoxing ^{*}**

Department of Physics, Hangzhou Normal University, Hangzhou 310036, China

- *Corresponding Author:
- Li Baoxing

Department of Physics

Hangzhou Normal University

Hangzhou 310036, China

**Tel:**086 571 28865282

**E-mail:**[email protected]

**Received date:** February 26, 2014; **Accepted date:** May 05, 2014; **Published date:** May 14, 2014

**Citation:** Y. H. Zhu, B.X. Li (2014) First Principles Study on Si_{n}O (n=14-18) and Si_{10-m}O_{m}(m=1-8) Clusters. J Theor Comput Sci 1: 113. doi:10.4172/2376-130X.1000113

**Copyright:** © 2014 Baoxing L, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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Combining the full-potential linear–muffin–tin–orbital **molecular-dynamics** (FP-LMTO-MD) and the Amsterdam Density Functional (ADF) with TZ2P basis set in conjunction with self-consistent-field (SCF), we have studied the geometric features and stabilities of the SinO (n=14-18) clusters.. The total binding energy Etot, gap of HOMO (highest-occupied molecular orbital)-LUMO (lowest-unoccupied molecular orbital) Eg, dipole moment μ and total constant volume heat capacity Cv(tot) were also calculated. The results show that the one dopant oxygen atom tends to occupy the edge or the surface position in the middle size silicon clusters (Sin, n=14-18). To further understanding the **evolutionary** tendency of the physical characteristics for the Si-O clusters with different composition, the Si10-mOm (m=1-8) clusters were also studied using the same methods. It was found that the structures of the Si10-mOm (m=1-8) clusters evolve from compact three dimensions to chain-like with increasing of the O proportion. The binding energy curve of Si10-mOm clusters with different m shows a dip at m=6, which suggests that an optimal proportion of O and Si atoms may exist in the Si10-mOm(m=1-8) **clusters**.

Si-O clusters; Stable structure; Bonding energy

Silicon and its oxides are important materials because of their wide application potential, such as light-emitting materia, [1-3] **solar energy** [4] and catalyst [5]. With the deeply understanding of the physical properties of the silicon oxide materials, more new application fields have been developed [6,7]. For example, the SiOx-based resistive switching behavior provides a new use for traditional SiOx materials [8]. In addition, the Si-O compounds are found to be very abundant in most dusty media in space, and thus important in astrophysical processes such as star and planet formation [9]. All these (potential) applications are closely related to the structures of these compounds, therefore a **systematical** study would be of great importance.

In recent years, the oxide silicon was investigated in both experiment [1,4,5,10-13] and theory [10-21] for its broad prospect in the application. Desjardin and co-workers [1] studied oxidation of Si (111)-(7×7) surface by STM. They found that the low coverage O_{2} molecules absorbed on the surface could form more stable structures at room temperature. Very recently, Kinahan et al. [4] revealed the quantitative relationship between the coverage of site-specific oxygen and a decrease of the Si (111)-(7×7) surface stress in tensile by the same method. Wang et al. [5] studied the Si_{3}O_{y} clusters using anion** photoelectron** spectroscopy and ab initio calculation. They presented that the Si3O4 may be a model structure for oxygen defect sites in bulk SiO2.

On the other hand, the features of the Si-O clusters are the key points in the study of the Si-O systems. Kinds of Si-O clusters such as Si_{m}O_{n} (m, n=1-8) [10,11], Si_{n}O_{n} (n=3-5) [12], Si_{m}O_{n} (m=1-5, n=1, 2m+1) [14], Si_{n}O_{n} (n>=5) [17], Si_{6}O_{n} (n=1-12) [19], Si_{7}O_{n} (n=1-14) [20] and SiOn (1<n≤6) [21] were studied by first principle calculations. Many new possible structures of these clusters were drawn and numerous unfamiliar features of them were investigated. Based on the quantum-mechanical calculations, Zhang et al. [10] studied the O-ratio-dependent features of the SimOn (m,n=1-8) clusters. They found that energetically the most favorable small Si-O clusters have O atomic ratios at about 0.6. James [12] found that the structure of the ground state Si_{3}O_{3} cluster is planar and the lowest energy structures of Si_{4}O_{4} and Si_{5}O_{5} are non-planar rings. Lu and coworkers [17] obtained the results that the binding energies of Si_{m}O_{n}(m=1-5, n=1, 2m+1) clusters increase with the number of oxygen atoms, and the dissociation energies of these clusters are strong relative to the O and Si atoms ratio in one cluster. In addition, some researches focused on the (SiO_{2})n nanoclusters [15,16,18]. A number of ringed, tube-like, cage shape, columnar and disk-like **nanostructures** based on SiO_{2} unit were illustrated in detail.

We studied oxygen molecule and one O atom adsorption on Sin (n<=13) clusters by the FP-LMTO-MD method [22-25] and ADF program [26] and the lowest energy structures for these clusters were given [13,27]. The calculated results show that there is a potential barrier of dissociative chemisorption of O_{2} when the Si clusters have more than four atoms. Moreover, it is found that the edge or the surface of the host Si clusters is the favorable adsorption sites for one O atom.

In this work, we investigated one oxygen atom adsorption on the middle size silicon clusters (Sin, n=14-18) and the Si_{10}-mOm (m=1-8) clusters using combination of the FP-LMTO-MD and ADF program. Our main purpose is to find the lowest energy structures of these clusters, and to explore the geometry and physical properties in the evolutionary procedure of the Si-O clusters with various compositions. Some new the lowest energy structures for these Si-O clusters were found. The total binding energy for Si_{10-m}O_{m} (m=1-8) clusters decrease, and then increase with the increasing of the ratio of Si:O.

The initial structures of the Si_{n}O (n=14-18) clusters are constructed through an oxygen atom being absorbed on the positions of the lowest energy silicon clusters [28] which are given by previous studies. Geometrical optimization algorithm is performed on the initial structures without any symmetry constraints by the FP-LMTO-MD method. For the Si_{10-m}O_{m} (m=1-8) clusters, a huge number of initial atomic conformations are randomly sampled within a real threedimensional box, or cage, or ball structure. Moreover, several chainlike initial structures of the Si_{10-m}O_{m} (m=1-8) clusters are also prepared.

After that, we choose the three lowest energy structures of each Si-O clusters in two types as candidates and re-optimize these selected structures by using the ADF program [26] version (2007.01) with TZ2P [29] basis set in conjunction with self-consistent -field (SCF). The TZ2P basis using in ADF is an all-electron basis with triple-zeta quality for valence region. The frozen-core approximation for the inner-core electrons is used. The orbitals up to 2p for silicon and 1s for oxygen are kept frozen. An accessional STOs (Slater Type Orbitals) basis set including s, p, d, f, and g-type is used to fit the molecular density and hence to present the Coulomb and exchange potentials more accurate. The combined self-consistent-field (SCF) is converged to a value of 10^{-6}. For both two types’ clusters, the frequencies of them are computed using numerical differentiation of gradients in slightly displaced **geometries**.

Furthermore, the cationic and anionic clusters corresponding to each neutral candidate are also calculated. Using the ADF program, such calculations can be performed by altering the charge state in the input file for a given cluster.

Existing imaginary frequencies indicate that the given molecular structure is unstable. Our calculated results show that there are no imaginary frequencies in the energy minima structures for both two types’ Si-O clusters. It suggests that our obtained the lowest energy structures are stable.

**Si _{n}O (n=14-18) clusters**

The three lowest energy structures for the Si_{n}O (n=14-18) clusters are shown in **Figure 1**. The number 0 and the sign +, - in parentheses represent the neutral, cationic and anionic clusters respectively. The three isomers are labeled as a, b and c in order of decreasing stability. For example, (0,-) a indicates that the labeled structures are the most stable structure for neutral and anionic clusters. The calculated results for each neutral Si_{n}O (n=14-18) cluster are listed in **Table 1**, which include the total binding energy (E_{tot}, in eV), electron affinity (EA, in eV), ionization potential (IP, in eV), the gap of HOMO-LUMO (Eg, in eV), dipole moment (μ, in Debye), and total constant volume heat capacity (C_{v(tot)}, in cal/mol•K).

Structure | E_{tot} (eV) |
EA (eV) | IP (eV) | E_{g}(eV) |
µ | C_{v} |
---|---|---|---|---|---|---|

Si14oa | -69.58 | 2.61 | 6.76 | 1.30 | 1.03 | 71.38 |

Si14ob | -69.35 | 2.61 | 6.94 | 1.40 | 1.20 | 72.00 |

Si14oc | -69.34 | 2.48 | 7.00 | 1.69 | 1.02 | 71.98 |

Si15oa | -74.90 | 1.60 | 8.11 | 1.85 | 2.37 | 76.92 |

Si15ob | -74.17 | 2.66 | 7.11 | 1.56 | 0.42 | 76.51 |

Si15oc | -74.06 | 2.44 | 7.23 | 1.78 | 2.19 | 76.74 |

Si16oa | -78.72 | 2.86 | 6.58 | 0.94 | 0.84 | 80.73 |

Si16ob | -78.65 | 2.78 | 6.48 | 0.72 | 1.27 | 80.99 |

Si16oc | -78.49 | 2.81 | 6.68 | 0.92 | 0.91 | 80.87 |

Si17oa | -83.45 | 3.05 | 7.13 | 1.21 | 0.72 | 86.54 |

Si17ob | -83.44 | 2.90 | 6.86 | 1.27 | 0.12 | 86.72 |

Si17oc | -83.06 | 2.63 | 6.53 | 1.08 | 1.55 | 86.85 |

Si18oa | -87.61 | 2.51 | 6.79 | 2.03 | 3.25 | 92.28 |

Si18ob | -87.58 | 2.50 | 6.72 | 1.54 | 4.47 | 91.64 |

Si18oc | -87.54 | 3.08 | 7.01 | 1.05 | 1.96 | 93.21 |

**Table 1:** The total binding energy (E_{tot}, in eV), electron affinity (EA, in eV), ionization potential (IP, in eV), the gap of HOMO-LOMO (E_{g}, in eV), dipole moment (µ, in Debye), and total constant volume heat capacity (C_{v}(tot), in cal/mol K), for the three lowest energy structures of Si_{n}O (n=14-18) clusters.

For the Si_{14}O cluster, their isomers are formed by an O atom being adsorbed to different sites of the ground state Si_{14} cluster [6,28]. The Si_{14}O(0)a structure with Cs symmetry lies 0.23eV energetically below the Si_{14}O(0)b structure. Both of the structures Si_{14}O(0)b and the Si_{14}O(0) c have C_{1} symmetries. The energy difference between them is only 0.01eV. Our calculated result shows that the largest energy difference between the adsorption structures with the same host Si structure can be up 0.8 eV.

For Si_{15}O isomers, the symmetries of the lowest two binding energy Si_{15}O clusters are both C_{2}, while for third one is C_{3}. The most and second stable structures of them are formed by the second lowest energy structure of pure Si_{15} cluster [28] absorbing an impurity oxygen atom at the different edge sites for a Si triangular pyramid unit. While, for the third stable Si_{15}O cluster, the O atom connects three Si atoms to form a triangular pyramid and lays on the apex site of the pyramid, as shown in **Figure 1**. The similar absorbed sites of O atom also can be found in other Si_{n}O (n=14-18) clusters (shown in the **Figure 1** and **2**). The energy of the cluster Si_{15}O (0)a is about 0.73eV and 0.84eV more stable than Si_{15}O(0)b and Si_{15}O(0)c , respectively.

The three lowest binding energy structures of Si_{16}O cluster are C_{2} **symmetries**. Comparison of the structures for the Si_{16} [6,28] and Si_{16}O cluster shows that the impure O atom will result in the compact pure cluster becoming loose. The distortion arising from the O atom doping is more significant for Si_{16}O clusters than for other Si_{n}O (n=14,15,17 and 18)clusters.

The three Si_{17}O clusters shown in the **Figure 1** are C_{s} symmetries, which are formed by one O atom being absorbed to the lowest and the third lowest Si_{17} clusters [6,28]. The difference of binding energy for the first and second stable structures is only 0.01eV. For the third stable isomer, the absorbed O atom leads the two ends of the pure Si_{17} cluster slightly bend to the center.

For the Si_{18}O isomers, the O atom performs as a trigonal facecapping atom. The symmetries for three lowest binding energy clusters are C_{3}, C_{2} and C_{3} in energy order. After the O atom is adsorbed, slight distortion occurs in the host silicon structures. The energy difference of three low-lying isomers of pure Si_{18} cluster is about 0.26 eV [6]. The absorption O atom reduces the difference to less than 0.07 eV. Hence, the three structures of Si_{18}O clusters can be regarded **degenerate** energetically.

Our calculated results reveal that the impurity oxygen atom is favorable to adsorb on the edge or surface site of the middle-size silicon clusters, the same phenomena also has been found in small-size SinO (n=1-13) clusters [27]. The Si atom with 3s^{2}3p^{2} electronic configurations, trends to through sp3 hybridization forming covalent bonds with other atoms. Meanwhile, the 2s^{2}2p^{4} O atom has lone electron pair of p orbital besides two p single electrons and probably forms two or three bonds with neighboring atoms in the mixed clusters. This is the main reason why the doped oxygen atom usually occupy the surface or edge site to form three or two bonds in the Si_{n}O clusters (the analyses in details see our previous study [13,27]).

For the adsorption structures with edge-capping O atom, O atom bridges two Si atoms by two bonds, in which the lengths are from 1.64 to 1.79Å. The bond angles of the Si-O-Si are from 90.5 to 116.1 degree. For the surface adsorption, the O-Si bond lengths are around 1.83 Å and slightly longer than bonds in the edge-adsorption’s case. Compared with the Sin (n=14-18) clusters [6,28], the structures of the Si_{n}O clusters become loose. We think the main reason is that the parts of charges transfer from the surrounding Si atoms to doped O atom and the covalent bonds are formed between them.

The ionic clusters corresponding to the above neutral Si_{n}O (n=14- 18) candidates with larger binding energies are also studied. The calculated results indicate that the neutral and ionic clusters show similar geometrical configurations and different stability orders. It is found from observing the positions of all atoms for a given Si_{n}O cluster that the differences of coordinates for the ionic and neutral clusters are less than 0.2Å. Such small difference is hardly to distinguish from the structural figures. So we use the same structure to describe the ionic and neutral cluster with similar motif. As shown in the **Figure 1**, the three lowest binding energy ionic and neutral Si_{14}O clusters have same energetic orders. While, when n>14, the energetic orders of ionic and of neutral Si_{n}O clusters are different. The energy gaps between HOMO and LUMO (E_{g}s) of ionic and of neutral Si_{n}O clusters are also different. For example, for example, for the three Si_{17}O isomers at the lowest energy state, the Egs of the neutral clusters are 1.21eV, 1.27eV and 1.08eV, while 0.23 eV, 0.36eV and 0.39eV for cationic isomers and 0.44 eV, 0.31eV and 0.32eV for anionic ones, respectively. We speculate that the electronic redistributions due to add or reduce one electron may contribute to the energy order and E_{g} changes.

We have also investigated the **magnetism **properties of the neutral and ionic Si_{n}O (n=14-18) clusters. It is found that the neutral clusters with even number of electrons have no magnetic moment because all the electrons are paired together in their respective molecular orbitals, whereas all the ionic clusters with odd number of electrons have the total magnetic moment of 1.0 lμB, which is trivial, due to one unpaired electron. In addition, Mulliken population analyses imply that about 0.62e to 0.66e charge transfer from the silicon atoms to the oxygen atom.

**Si _{10-m}O_{m} (m=1-8) clusters**

Zhang and co-workers reported that the binding energies per O atom for Si_{6}O_{n} (n=1-12) increased with the numbers of O atoms at first, and then decreased when n>8 [19]. The similar tendency also was found in Si_{7}O_{n} (n=1-14) clusters [20]. The structural feature of Si_{m}O_{n} clusters strongly depend on the ratio of component Si and O atoms [14,19,20]. For small Si_{m}O_{n} clusters, the structural motif will transit from a disk-like structure to a double-oxygen-bridged rod structure [19].

In order to explicitly explore how the different ratio of Si:O effect on the structural evolution properties and physical characteristics for the SiO mixed clusters, the Si_{m}O_{10-m} (m=1-8) clusters are studied. The initial structures of them are given by unbiased global search (details see the method). More than 4000 candidates for each Si_{m}O_{10-m} clusters with different m are calculated, and the most stable structures of them are shown in the **Figure 2**. For all clusters, the bond lengths of O-O, Si-O and Si-Si fall between 1.52-1.65 Å, 1.67-1.71 Å and 2.31-2.95 Å, respectively. The shortest Si-O bond is the single Si-O bond in Si_{3}O_{7} cluster.

For Si_{9}O cluster, the O atom is adsorbed on the edge site of the lowest energy Si_{9} cluster [30], which excellently agrees with our previous results using different method [27]. To our knowledge, the ground-state structure of Si_{8}O_{2 }cluster has never been reported up to now. The Si_{8}O_{2} cluster has Cs symmetry. It looks like a silicon crown being adorned with two O atoms jewels. When m≥3, the Si_{3}O_{3}-ring and Si_{2}O_{2}-rhombus structures formed in the ground state Si_{m}O_{10-m} clusters. With the ratio of O atom further increasing, the Si_{m}O_{10-m} clusters trend to form the chain-like conformation. Our calculated lowest energy structures of Si_{7}O_{3}, Si_{6}O_{4}, Si_{5}O_{5}, Si_{4}O_{6} and Si_{3}O_{7} are in agreement with the findings of other groups [14,19,20]. The most stable structure for Si_{2}O_{8} cluster consists of the two SiO3 rhombuses and one Si_{2}O_{2} rhombus buckled-chain structure. The computation of frequencies shows that the structure Si_{2}O_{8} is stable because no **imaginary** frequencies exist. We also calculated the SiO_{9} clusters. The structures are unstable, therefore, the dissociated SiO_{9} cluster does not be listed.

The Si_{4}O_{6} cluster is the most stable in all the Si_{10-m}O_{m} (m=1-8) clusters. The chain-like Si_{4}O_{6} cluster with D2 symmetry is formed by three Si_{2}O_{2}-rhombuses sharing with two Si atoms. The lengths of Si-O bonds in the cluster are different. The lengths of Si-O bonds connecting the two ends Si atoms are 1.73 Å, which are longer than the other –bonds’ lengths (about 1.68 Å). Mulliken population analyses imply that the some charge transfer from silicon atoms to oxygen atoms. For neutral Si_{4}O_{6} cluster, the dipole moment is zero due to symmetrical structure.

**Figure 3** plots the total binding energies E_{tot} (Si_{10-m}O_{m}) versus the number of oxygen atoms. As opposed to the linear curve of the nitrogen atom and aluminum atom doped to Si clusters [31,32], the curve for the Si-O mixed cluster shows a valley. With the number O atom increasing, the Etot (Si_{10-m}O_{m}) decreases linearly when 1≤m≤6, and then goes up when m > 6. This is to say that the lowest binding energy structure for Si_{10-m}O_{m} cluster with the ratio of 0.6 for O component, which is similar to the findings by Zhang’s in the Si_{m}O_{n} (m, n=1-8) clusters [14]. On the one hand, comparing the Si_{10-m}O_{m} clusters, there is a tendency that the structures of the Si_{10-m}O_{m} clusters evolve from compact three dimensions to chain-like with increasing of the proportions for O components. On the other hand, the symmetries of these clusters increase with O when m≤6. Therefore, the energetic valley may suggest that the stability of the mixed Si-O clusters depends on the cooperation of the composition and structural properties.

The second different energyΔ_{2}E (eV) is a sensitive quantity to reflect the stability of clusters. It is defined as Δ_{2}E (Si_{10-m}O_{m})= E_{tot} (Si_{10-(m-1)} O_{ m-1})+ E_{tot} (Si_{10-(m+1)} O _{m+1}) -2 E_{tot} (Si_{10-m}O_{m}) . TheΔ_{2}E have the largest value at m=6, also indicates that the Si_{4}O_{6} cluster is more stable than their neighboring clusters (**Figure 4**). In addition, the Δ_{2}E also displays an even/odd alternating pattern as a function of cluster size. The clusters with even oxygen atoms present higher stability.

The energy gaps E_{g} between the highest-occupied molecular orbital (HOMO) and the lowest-unoccupied molecular orbital (LUMO) are showed in **Figure 5**. The highest peak occurs again at the Si_{4}O_{6} cluster. The energy gaps also display a certain even/odd alternating pattern as a function of cluster size. All the evidences mentioned above suggest that the ratio 4:6 is the optimal proportion for the stability of the Si_{10-m}O_{m} (m=1-8) clusters. Chu et al. found that when O ratio reaches to about 60% in a small Si-O clusters, the energy gaps of the clusters present the biggest value [11]. Such result is a convincing evidence to support our conclusion.

Furthermore, it is found that the rhombus Si_{2}O_{2} unit is a basic structure of ground Si-O clusters [5,11,33,34]. Two rhombus Si_{2}O_{2} units will buckle with each other by sharing a central Si atom to form a stable chain-like configuration. Such structural patterns are usually found in ground state Si-O clusters [5,11,13,19,20]. In other word, to form the stable buckled rhombus Si-O chain, for each added Si atom needs two O atoms more. This may be the reason why the Si-O clusters with even oxygen atoms possess lower binding energy.

The heat capacities of the clusters are computed based on the ideal gas approximation omitting the electronic contribution. The heat capacity Cv is related to the number of degrees of freedom (DoF) of the cluster system. In ideal gas model, the nonlinear cluster with n atoms has 3 translational, 3 rotational and 3n-6 vibrational DoF. The molar heat capacity of the n-atom cluster is [3+3+2(3n-6)]•R/2, where R is the ideal gas constant. For Si_{10-m}O_{m} (m=1-8) clusters, the C_{v(tot)} equals to 27R (≈53.6 cal/mol•K). In our calculation, Si_{9}O cluster shows the largest heat capacity 45.4 cal/mol•K. The smaller C_{v}(tot)s with respect to the theoretical values may due to the inactivation of some vibrational DoFs. According to the ideal gas model, the heat capacity of the cluster only relates to its atom number. Thus, the Si10-mOm clusters would have similar value of the Si_{10-m}O_{m} cluster. However, it is interesting that the C_{v}(tot) of Si_{10-m}O_{m} cluster decreases gradually with the proportions of O atomic increases (See **Figure 6**). Observing the structural evolution of Si_{10-m}O_{m} clusters, it is found that the structures of these clusters vary radically with the increasing of the ratio for oxygen: the whole structure for silicon-rich clusters transfer to the **fragments** consisted for oxygenrich clusters. We assume that such structural changes may contribute to the decreasing of Cv with increasing of the O component’s ratio for the Si_{10-m}O_{m} clusters.

The Si_{n}O(n=14-18) and Si_{10-m}O_{m}(m=1-8) clusters are investigated systemically by using the FP-LMTO-MD and the ADF with TZ2P basis set in conjunction with SCF. The calculated results suggest that the edge and surface adsorption structures are the favorable structures for the middle size silicon clusters doped an oxygen atom. For Si_{10-m}O_{m} (m=1-8) clusters, their structures evolve from compact three dimensions to chain-like with increasing of the proportion of O. The Si_{4}O_{6} cluster has the lowest bonding energy and the largest Δ_{2}E. It suggests that the conclusion which the small silicon-oxygen clusters have the optimal ratio of 0.6 for O component [14] is still correct in the Si_{10-m}O_{m} (m=1-8) clusters. Whether the bigger Si-O clusters still have such optimal O ratio needs further study.

The Natural Science Foundation of Zhejiang Province (Grant No. Y6100098) the Science Foundation of Zhejiang Province Department of Education (Grant No. Y201018280) and the Science Foundation of Hangzhou Normal University (Grant No. 2010QN03) supported this work.

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