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Department of Physics and Astronomy, University of South Carolina, Columbia, SC 29208, USA

- *Corresponding Author:
- Datta T

Department of Physics and Astronomy

University of South Carolina, Columbia, SC 29208, USA

**Tel:**8037772075

**E-mail:**datta@physics.sc.edu

**Received date:** February 02, 2016; **Accepted date:** February 04, 2017; **Published date:** February
10, 2017

**Citation: **Datta T (2017) The Imperatives in Atomic Structure Analyses: Lessons from Three-Dimensional Diffraction Gratings, Specular Reflection and Quasi-
Crystals. J Thermodyn Catal 8:e135. doi: 10.4179/2160-7544.1000e135

**Copyright:** © 2017 Datta T. This is an open-access article distributed under the
terms of the Creative Commons Attribution License, which permits unrestricted
use, distribution, and reproduction in any medium, provided the original author and
source are credited.

**Visit for more related articles at** Journal of Thermodynamics & Catalysis

A number of challenges in atomic structure in the coming decades lie where the techniques of the past appear to be wanting. The most notable ‘up to the minute’ exigencies that have taken center stage are the complications of microscopic specimen size and soft order [1,2]. The last problem surfaced with Dan Shechtman’s discovery of quasi-crystals [3,4]; systems in which the diffraction pattern defy Bravais classification or the assignment of Miller indices. It exposed a severe inadequacy in Laue-Bragg’s famously successful technique in crystallography [5-9]. Furthermore new advances such as high intensity coherent radiation beams, ultrashort exposure and extremely fast detectors, coupled with the desire for atomic resolution in real time, demands a reassessment of the premises of classical crystallography; also it is imperative to find the way to an alternate approach that is indifferent to long-range order and baggage from the associated reciprocal space, leverages the principle of ‘reflection-diffraction duality’ to embody Bragg’s computationally facile top-down approach with Laue’s local bottom-up perspective, and (ii) covers a definition of crystal matter that is more inclusive especially the complex regime of partial loosening of order, but not complete disorder.

The Nobel winning discovery of ‘Laue spots’ in 1912 is one of the
pivotal breakthroughs in history [10]; to this day, over a century later
its implications continue to reverberate through the sciences. In 1925
Alver Gullstrand, Chairman of the Royal Swedish Academy of Sciences
would declare [11], “ *This epoch-making discovery [Laue spots], which
not only bore upon the nature of X-radiation and the reality of the
space lattice assumed in crystallography, but also placed a new means
of research into the hands of Science* …”. Paradoxically, although Max
Laue anticipated the ‘Laue effect’, but his new 3-dimensional vector
diffraction theory had some serious flaws [12]. As a matter of fact, this
theory shockingly misinterpreted the observed patterns. Nevertheless
out of Max Laue’s fecund but imperfect analogy of three-dimensional
diffraction gratings, wave scattering has emerged as a blockbuster
success in a wide range of technologies including low energy
electron diffraction (LEED), x-ray crystallography (XRD), and x-ray
fluorescence (XRF). Techniques helped reveal the geometric structures
of the simplest salts as well as the complex double helix spirals of the
two strands of polynucleotides in life’s genetic code, deoxyribonucleic
acid (DNA), netting dozens of Nobel Prizes in Physics, Chemistry and
medicine.

A surprise came in the early 1980’s with Dan Shechtman’s perplexing discovery [3,4] of spot patterns that disturbed the certitude of classical crystallography. This quasi-crystal puzzle would force the International Union the International Union of Crystallography to a redefinition of crystals in 1991 [13]. And in 2011 Shechtman would be honored with the Nobel Prize for chemistry. Here we query where Laue’s mathematics slipped and where Bragg’s formula really and exactly fits into classical crystallography. Especially re-examine the legacy of Miller indices and the dual space and prompt an improved approach that accommodates current trends and future needs of structure analysis; particularly the concerns of imperfect order, realspace configuration, microscopic specimen size, and extremely short exposures to high intensity beams [1,2,14].

In 1912 Max Laue an expert and lecturer of optics in Arnold Sommerfeld’s theoretical physics Institute at Ludwig-Maximilians- University (LMU) in Munich, Germany, theorized that if solid crystals comprise of ordered, three-dimensional packing of atoms, then diffraction spots would be produced by passing x-ray waves through crystals.. In his Nobel Prize lecture [10] Max von Laue described the run up as

*“the acknowledged masters of our science, … entertained certain
doubts about this viewpoint…. A certain amount of diplomacy was
necessary before Friedrich and Knipping were finally permitted to carry
out the experiment “.*

After Laue’s presentation at the Berlin Physical Society on June 8 1912, his former professor Max Planck, a close scientific associate and long-time friend Albert Einstein, the general relativist Karl Schwarzschild (of Black hole fame) and others applauded Laue’s prescience.

**Albert Einstein**

To explain his effect, Max Laue an authority in physical optics proposed that real crystals coherently scatter off x-ray waves, as would a three-dimensional diffraction grating. Notice, that until this time only one and two-dimensional cross gratings were in existence, although the later was of little practical use. But a 3-d grating was totally a new invention. In his Nobel lecture quoted earlier, [10] Laue describes it as

*“at that point that my intuition for optics suddenly gave me the
answer: lattice spectra would have to ensue”.*

Guided by an analogy with one and two-dimensional optical
gratings ‘generalized’ to the third dimension, (**Figure 1**) Laue demanded
that at each spot the wave and lattice vectors must satisfy the following
set of three ‘fundamental equations’, as follows

**Figure 1: **Laue diffraction kernel in an orthorhombic crystal and a ray (OO”)
in three-dimensional Euclidean space. The four atoms, the Cartesian axes
and the ray define three planes, namely XAOO”, YBOO” and ZCOO”,
the angular coordinates of OO” are the three angles (α, β, γ). The lattice
vectors are a, b and c respectively.

(1)

Likewise

(2)

and

(3)

The ‘dot’ in eqs. 1-3, stand for scalar product, angles are measured with respect to the crystal axes and the Laue indices or order numbers nx, ny and nz, are three independent (typically small but not necessarily distinct) integers. In Laue’s bottomup description, short-range local order is paramount; the effect of the entire crystal is modeled by the actions of just the few atoms included in the kernel.

Incredibly, it was Max Laue’s own 3-d diffraction grating theory that was problematic and consequently failed to interpret Friedrich and Knipping’s experimental data [12]. As a matter of fact simultaneously satisfying the dispersive equations along all the three Cartesian axes was overwhelming and Laue’s results came out erroneous, including a wrong answer for the crystal density! Incidentally, Laue was aware of some of the problems with his theory, because in his Nobel lecture he stated,

*” … the three specified numbers… I made no secret of the fact that I
could not attribute to these values the same degree of reliability…”*

But Max Laue did not realize that he did not properly constrained the system of equations and lacked Euclidean length invariance; so the theory was producing too many solutions [12]. As a matter of fact, it is not generally known that Euclidean geometry and dimensionality of the space-time have a significant influence on what physical phenomena are permissible; vector product and Huygen’s principle for wave are two classic peculiarities of 3+1 dimensional space-time [15]. In 3+1 dimensional space-time, generalizing from one-dimensional to two-dimensional gratings is ‘trivial’ because the angular position of any maximum is completely determined by the grating constant in that particular direction. For example, two cross gratings with same grating constant, b, along y direction but different values of a (along the x-axis), the nx=2 and ny=1 maximum will be produced, at exactly the same angle β, but at two different values of α, as determined by equation 1. The reader will immediately notice that the angle γ wrt to the z-axis is also different because the angles α, β and γ are not independent, but interlinked by the square of the direction cosine rule, as follows,

(4)

In essence in the space we live in it is impossible to impose three Cartesian components independently of each other as seemingly required by Laue’s three fundamental equations 1-3. Consequently, there is a critical theoretical difference between 2-d and 3-d gratings. Allvar Gullstrand, [11] quipped

*“Inasmuch as this is a three-dimensional grating, its effect is in
essential respects unlike the effect of the previously known line and cross
gratings”.*

William Henry Bragg (WHB) the erstwhile professor of physics at
Adelaide, Australia and an acknowledge authority in x-rays, who by
this time was a physics professor at Leeds, in UK along with his son
William Lawrence Bragg (WLB) took notice of Laue’s effect [16-20]. So
did Ernest Rutherford’s atomic group at Manchester [21,22]. Especially
Rutherford’s protégé the young and brilliant Henry Gwyn Jeffreys
Moseley, Henry Moseley was particularly critical of Laue’s theory and
in a letter to his mother, he wrote “[Laue] *gave an explanation which
was obviously wrong*”.

Truth be told, Moseley was notorious for his critical attitude towards fellow researchers as-well-as his own doctoral advisor Earnest Rutherford, ‘son of a flax farmer’ from New Zealand, a small inconsequential colony in the remotest frontier of the then vast British Empire. Nevertheless Moseley’s self-confidence and genius was recognized at Manchester and despite his initial hesitations about jumping on the crystal structure band wagon, Rutherford would let Moseley temporally move to Leeds to learn x-ray spectroscopy, then being invented and developed by WHB. Perhaps not so coincidentally, at the very same time June-August of 1912 Rutherford’s visiting ‘postdoc’ Niles Bohr, would also abruptly change his previous research plan and get busy with a new theory for a stable quantum atom. Mosley made excellent use of his stay at Leeds and upon his return to Rutherford’s laboratory back in Manchester atom he would soon invent x-ray fluorescent spectroscopy (XFS) and apply it to discover his name sake Moseley’s Law, which relates the frequency (energy) of Barkla’s characteristic x-ray emission from the atom with the nuclear charge of the chemical element. As a matter of fact in the process discovering atomic number (Z) and identifying Z with the nuclear charge of the atom. He was a nominee for the Physics Nobel Prize in both 1914 and 1915 and certainly would have been a recipient; because in the same (1925) lecture [11] Alvar Gulstrand also announced that

*“the greatest success by the young scientist Moseley… He further
discovered … what is known as the atomic number, … has proved to
distinguish the elements better than the atomic weight … Moseley fell at
the Dardanelles before he could be awarded the prize “.*

Henry Moseley is recognized as one of the youngest pioneers in
nuclear physics. However, it was WLB who proffered a new explanation
for Laue’s effect that correctly accounted for all the observations and
paved the way to atomic crystallography. Incidentally, at that time
Bragg was also a student of Joseph John Thomson (Cavendish) and
William Jackson Pope (Chemistry) at Cambridge University. Earlier
Professor Pope [23] along with the well-known British amateur
geologists William Barlow [24] had already developed close packed
model structures of various crystals. Barlow was also the first to
note the differences between simple cubic and of face centered cubic
arrangements of atoms, a point that Laue had completely missed in his
analysis, described earlier (**Figure 2**). William Lawrence Bragg had an empirical and more hands on approach. Noting that when he turned
the crystal target by 3o, the whole spot pattern rigidly rotated by 6o, and
knowing that generally diffraction patterns follow some complicated
trigonometric dependence, Bragg realized that certain planner surfaces
in the crystal must be (partially) reflecting off the x-rays. Apparently, C.
T. R. Wilson of cloud chamber fame had a part in this, because in his
first paper [16] published in November of 1912 WLB writes,

*“… it was suggested to me by Mr. C.T.R. Wilson that crystals with
very distinct cleavage planes, such as mica, might possibly show strong
specular reflection of the rays. On trying the experiment it was found
that this was so… left no doubt that the laws of reflection were obeyed…
bending the mica into an arc, the reflected rays can be brought to a line
focus … yet the effect almost certainly not a surface one… ”.*

Bragg’s focus was on the large-scale geometry, specifically atomic planes but not on local atomic order. He introduced the practice of identifying a spot by the Miller indices (h, k, l); he also proffered the eponymous formula or Bragg’s law for the wavelength of x-ray associated with a spot as,

(5)

Where θ is the ‘glancing angle’ and dB the inter-planer distance and n is the Bragg integer. In equation 5, wave dispersion is effective only along dB a direction perpendicular to the planes. Freed from the direct considerations of 3-dimensional lattice periodicity, Bragg’s law also dispenses of Laue’s desperate conjectures including the infamous ‘missing spot’ proposal, invoked to interpret the patterns recorded by Friedrich and Knipping [12]. Unsurprisingly Bragg’s formula is computationally frugal. Once again Alver Gulstrand [11] lauded,

*“…It was by a stroke, brilliant in its simplicity, that the Englishman
W.L. Bragg succeeded in replacing von Laue's comparatively complicated
theory of the effect of the crystal lattice by an extremely manageable
formula …”.*

In classical crystallography Bragg and Laue’s formulations are
reconciled by imposing a set of stringent selection rules in this
dual space, such that each Bragg reflection spot is associated with a
reciprocal lattice node. In his publications Bragg introduced Miller
indices for calculating the inter-plane separation distance d Bragg.
Reciprocal lattice parameters remain central in crystallography. Legacy
of the dual space is also apparent in textbooks such as *Solid State
Physics*, (p 99-100) by Neil W Ashcroft, N David Mermin [25] where
it is explained that “a Laue diffraction peak corresponds to a change in
wave vector given by the reciprocal lattice vector **K** corresponds to a
Bragg reflection from the family of direct lattice planes perpendicular
to **K**. The order, n, of the Bragg reflection is just the length of **K** divided
by the length of the shortest reciprocal lattice vector parallel to **K**.”
Similarly in *Principles of the Theory of Solids*, the author JM Ziman
[26] writes, (pp: 52-54) that “To satisfy these geometrical conditions in
reciprocal space we construct the *Ewald sphere* with radius OP equal to
the incident wave-vector …”. It is crucial factor for the convergence of
Laue’s diffraction with Bragg’s reflection is that the scattering system
be perfectly crystalline and of sufficiently large extension to posses a
reciprocal space.

For almost three-quarters of the last century Bragg’s eponymous formula would remain famously unchallenged. Nevertheless, particularly because of its heuristic or semi-empirical rationale, many experts take Bragg’s Law as an ansatz to Laue’s diffraction theory; for instance the noted author Charles Kittle writes “[Bragg] is simple but is convincing only because it reproduces the results of Laue” [27]. Bragg’s law was severely pushed back from the experimental side as well by Dan Shechtman discovery of the illicit five-fold-symmetry in electron diffraction patterns of some rapidly quenched metallic alloys. Upon his initial observation, Dan Shechtman, had reportedly blurted out in his native Hebrew ka,"Eyn chaya zo," (there can be no such creature).

These quasi-crystals are out of bounds of the conventional Bravais
lattice classifications and the spots for these puzzling systems cannot
be Miller or Bravais indexed. Consequently, neither reciprocal lattice
concepts nor Bragg’s law are applicable to quasi-crystals. Eventually the
accumulated experimental evidence compelled the International Union
the International Union of Crystallography to a redefinition of crystals
[13]. However, the occurrence of the forbidden symmetry would be
too perplexing for some of the leading authorities in crystallography,
in particular the two-time Nobel winning chemist Linus Pauling.
“*Danny Shechtman is talking nonsense, there are no quasi-crystals, just
quasiscientists*."

- Linus Pauling

The 3-d diffraction grating failed to correctly predict the spots
pattern. But Laue’s bottom-up theory is based on the tiniest periodic
structure, hence the most diffractive part of the whole system– Max
Laue’s scheme zeroes in on the most relevant length scale. In this sense,
Laue was absolutely right- a small organization of atoms and a large
crystal with perfect translational order would both produce spots, there
can be no question about that. Laue missed important details but had
a very fruitful idea. So our first lesson should be as follows-“*It is more
important to be fruitful than correct*” - A.N. Whitehead On the other
hand Bragg’s heuristic law of two-dimensional atomic planes correctly
solve structure of perfect crystals. Coincidentally, in 1914 Max von
Laue was awarded the Nobel Prize for physics with the official citation,
"*for his discovery of the diffraction of X-rays by crystals*". Apparently
Laue was fully cognizant of the success of the interference description
and titled his Nobel Lecture [10] as “*Concerning the Detection of X-ray
Interferences*”! A system with long-range order may not exist without
short-range order, although localized orderly regions may co-exist in
a disordered system. As a result Bragg’s law fails in quasi-crystal, i.e.,
systems with short-range order that lack longrange organization.

This brings us to our second lesson, the principle of ‘reflectiondiffraction duality’, that is regardless of the mechanism that bring the wavelets or contribute to the deviation from the rectilinear wave propagation, maxima are obtained only when (where) waves with the correct phase conditions constructively superpose. Hence, diffraction explains spots from quasi-crystals whereas specular reflection is the description for perfect crystals. As a matter of fact, without explicitly invoking reflection-diffraction duality this idea of is often implied; for instance the section on ‘crystal diffraction’ a celebrated textbook [28] describes the relevant physics of wave scattering process as reflection, without ever using the word ‘diffraction’, not even once in the entire text!

Upon interaction with atoms in a specimen, waves of appropriate phase difference give rise to maxima; the geometric pattern of the maxima provides a faithful map of the spatio-temporal distribution of the atoms. The famous Bragg’s law of classical crystallography is extremely facile and productive but requires perfect crystal specimens. Furthermore lacking a firm theoretical foundation has been a weakness of Bragg’s law. Structure analysis without Bragg’s law is possible in principle but correctly taking into account the diffraction of a large number of atoms requires large computing power. Incorporation of reflection-diffraction duality may permit one to treat coherent wave scattering more economically even in the Laue limit. One strategy is to start with Laue’s three diffraction equations and without the use of the reciprocal lattice mathematically derive the geometrically correct solution. Such a solution will be (i) based on a solid theoretical foundation, (ii) applicable to systems with both short and long range orders, plus (iii) provide benchmarks for comparisons with experimental data. Additionally a fresh understanding is likely to benefit current and future trends toward high intensity radiation, short exposure, decreased order and specimen size plus emphasis on real space visualization.

- Keen DA, Goodwin AL (2015) The crystallography of correlated disorder. Nature 521: 303-309.
- Ayyer K, Yefanov OM, Oberthür D, Chowdhury SR, Galli L, et al. (2016) Nature 530: 202-206.
- Lifshitz R, Shechtman D, Ben-Abraham SI (2008) Quasicrystals: The Silver Jubilee
*,*Proceedings of a Conference held in Tel Aviv. Philosophical Magazine 88: 1879-2351. - Shechtman D (2011) Nobel Lecture: Quasi-periodic Materials - a Paradigm Shift in Crystallography.
- Sumner T (2014) Dazzling history. Science 343: 1092.
- Thomas JM (2012) Centenary: The birth of X-ray crystallography. Nature 491: 186-187.
- Thomas JM (2013) William Lawrence Bragg: The Pioneer of X-ray Crystallography and his Pervasive Influence. Angew Chem Int 51: 12946-12958.
- Ewald PP (1962) William Henry Bragg and the new crystallography. Nature 195: 320-325.
- Datta T (2012) A Century Plus of X-rays. J Thermodynam Cat.
- Laue MV (1915) Concerning the detection of X-ray interferences. Nobel Lecture.
- Gullstrand A (1925) Physics of the Royal Swedish Academy of Sciences. Nobel Prize Award Ceremony Speech.
- Datta T (2015) Laue: right or wrong? Physica Scripta 90: 038002.
- IUCr Commission (1991) Report of the executive Committee for 1991.
- Kupitz C, Basu S, Grotjohann I, Fromme R, Zatsepin NA, et al. (2014) Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser. Nature 513: 261-265.
- Datta T, Yin M, Wang Y, Wescott M, Foster R, et al. (2008) Non-specular Reflective Optics. arXiv preprint.
- Bragg WL (1912) The Specular Reflection of X-rays. Nature 90: 410.
- Bragg WL (1913) The Diffraction of Short Electromagnetic Waves by a Crystal. Proceedings of the Cambridge Philosophical Society 17: 43-57.
- Bragg WL (1913) The structure of some crystals as indicated by their diffraction of X-rays. Proc R Soc Lond A 89: 248-277.
- Bragg WL (1968) X-ray Crystallography. Sci Am 219: 58-70.
- Bragg WL (1917) Nobel Lecture.
- Jeong Y, Yin M, Datta T (2013) Quantization of the Atom plus Attempting to Answer Heilbron & Kuhn. arXiv preprint arXiv: 1311.0252.
- Reeves R (2008) A Force of Nature.ISBN 978-0-393-33369-5.
- Wang Z (1995) The First World War, Academic Science, and the “Two Cultures”: Educational Reforms at the University of Cambridge. Minerva 33: 107.
- Tandy P (2004) William Barlow (1845-1934): Speculative builder, man of leisure and inspired crystallographer. Proceedings of the Geologists' Association 115: 177-184.
- Ashcroft NW, Mermin ND (1976) Solid State Physics. Saunders WB Co., Fort Worth, TX, USA.
- Ziman JM (1979) Principles of the Theory of Solids. Cambridge Univ Press, Cambridge, UK.
- Kittel C, Holcomb DF (1971) Introduction to Solid State Physics. American Journal of Physics 35: 547-548.
- Feynman RP, Leighton RB, Sands M (1963) The Feynman Lectures on Physics. Volume i. American Journal of Physics 33: 750-752.

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