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ISSN: 2157-2518
Journal of Carcinogenesis & Mutagenesis
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Tumor Suppressor RIZ1 in Carcinogenesis

Wanpeng Sun and Jian Yang*

Drug Discovery and Development Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Canada

*Corresponding Author:
Jian Yang
Drug Discovery and Development Research Group
College of Pharmacy and Nutrition, University of Saskatchewan
107 Wiggins Road, Saskatoon, SK S7N 5E5, Canada
Tel: 306-966-6361
Fax: 306-966-6377
E-mail: [email protected]

Received date: October 30, 2013; Accepted date: January 22, 2014; Published date: January 27, 2014

Citation: Sun W, Yang J (2014) Tumor Suppressor RIZ1 in Carcinogenesis. J Carcinog Mutagen 5:160. doi: 10.4172/2157-2518.1000160

Copyright: © 2014 Sun W, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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Human retinoblastoma protein-interacting zinc-finger gene RIZ (PRDM2) encodes two protein products, tumor suppressor RIZ1 and proto-oncoprotein RIZ2, using alternative promoters. RIZ1 and RIZ2 regulate normal cell division in a Yin-Yang fashion with RIZ1 arresting cells in G2/M phase and inducing apoptosis and RIZ2 promoting cell proliferation. Silenced RIZ1 expression has been detected in various types of cancer. Because both RIZ isoforms contain multiple functional domains, their function mechanisms in suppressing or promoting tumor growth are complex. Based on the current knowledge, it is rational to propose four potential routes for RIZ1 to exert its tumor suppressing functions: directly repressing the promoters of growth factors such as insulin-like growth factor-1 via H3K9 (histone H3 lysine 9) methylation, regulating estrogen-induced pS2 transcription through forming a complex with transcriptional co-activator p300, activating tumor suppressor p53 using a methylation-acetylation interplay, and blocking gene transcriptions by binding to PR-Set7 and establishing a H4K20me1 (histone H4 lysine 20 monomethylation) - H3K9me1 (histone H3 lysine 9 mono-methylation) trans-tail ‘histone code’ at an ectopic locus.


Tumor suppressor; Carcinogenesis; RIZ gene


Human tumor suppressor RIZ1 (PRDM2) is encoded by the retinoblastoma protein-interacting zinc-finger gene RIZ (PRDM2), which was first identified from a functional screening for retinoblastoma tumor suppressor binding genes [1]. Gene RIZ is located on the distal short arm of human chromosome 1 (1q36.21), which also harbors other tumor suppressor genes such as CHD5. Besides RIZ1, gene RIZ encodes a second protein product, RIZ2, using an internal promoter other than the promoter that transcribes full-length RIZ mRNA [2-4]. Theoretically, it is possible to have other RIZ isoforms from alternative RNA splicing since gene RIZ contains more than 10 potential exons [3]. As shown in Figure 1, except for an N-terminal PR domain possessing histone methyltransferase (HMT) activity, RIZ1 and RIZ2 share the same amino acid sequences and both contain a Rb-binding domain, eight zinc finger motifs, a src homology 3 (SH3) domain, a putative GTPase domain, a proline-rich domain and a PR-binding motif (PRB). The expression level is almost identical between RIZ1 and RIZ2 among different human tissues except testes; and such an equivalent expression is essential for normal cell growth and functions [2,5,6].


Figure 1: Structural components in tumor suppressor RIZ1 and its alternatively transcribed proto-oncoprotein RIZ2. Except the PR domain located at the N-terminus of RIZ1, both RIZ isoforms containing a retinoblastoma-binding (Rb) domain, eight zinc finger motifs (shown in pink), a SH3 domain, a putative GTPase domain, a proline-rich region and a PR domain-binding motif (PRB).

Silencing of RIZ1 during Carcinogenesis

RIZ1 and RIZ2 regulate normal cell division and functions in a Yin-Yang fashion [2-4]. RIZ1 acts as tumor suppressor to arrest cells in the G2/M phase of cell cycle and induce cell apoptosis; whereas RIZ2 functions as a proto-oncoprotein to promote cell proliferation [5,6]. Silenced or decreased RIZ1 expression, commonly associated with normal or increased RIZ2 expression, has been detected in various types of cancer [1,3-36]. The silencing of RIZ1 expression is through at least one of the following four mechanisms:

Methylation of the CpG islands in RIZ1 promoter

This is the mostly studied mechanism, but identity of the enzyme that methylates RIZ1 promoter is still not clear. Aberrant methylation of RIZ1 promoter has been observed in different types of cancer (Table 1) [4,7-27]. Nevertheless, a pairwise analysis by Feng et al. did not find increased methylation of gene RIZ between normal and malignant breast tissues [37]. Recently, RIZ1 promoter was shown to be upregulated by silencing SMYD3 (SET and MYND domain-containing protein 3), a histone/protein methyltransferase, in human hepatoma [38] and down-regulated by silencing transcriptional repressor YY1 (Yin Yang 1) in human osteosarcoma [39]. Further studies are definitely warranted to understand how RIZ1 promoter is regulated by SMYD3, YY1, and even other histone/protein methyltransferases and transcriptional repressors.

Cancer type Sample size Promoter methylation References
Liver cancer 32 42 48 60 39 42 62% (20/32) 79% (33/42) 67% (32/48) 62% (37/60) 56% (22/39) 45% (20/42) [4-11]
Neuroblastoma 33 <10% [12]
Breast cancer 25 44% (11/25) [4]
Colorectal cancer 38 16% (6/38) (high-level MSI) [13]
Ovarian cancer 89 69 22% (20/89) 7% (5/69) [14,15]
Gastric cancer 75 45 30 67% (50/75) 69% (31/45) 37% (11/30) [16-18]
Prostate cancer 47 101 43% (20/47) 31% (31/101) [19,20]
Thyroid cancer 19 100% (19/19) [21]
Cervical cancer 40 38% (14/40) [22]
Parathyroid cancer 47 36% (17/37) [23]
Malignant pheochromocytoma 4 50% (2/4) [23]
Nasopharyngeal carcinoma 30 53 60% (18/30) 57% (30/53) [24,25]
Acute lymphoblastic leukemia 71 72 16% (T: 64%, B: 7%) 31% (22/72) [26,27]

Table 1: RIZ1 promoter methylation in various types of cancer.

Loss of heterozygosity (LOH) within the RIZ locus

Gene RIZ is located on the short arm of chromosome 1 (1p36), which is unstable and frequently lost in human malignancies via nonrandom deletions [40-42]. LOH within the RIZ locus in different types of cancers has been summarized in Table 2 [18,23,28-31]. However, a recent review on five candidate tumor suppressor genes, CHD5, CAMTA1, KIF1B, CASZ1 and miR-34a, located on 1p36 showed that partial impairment instead of complete inactivation of their expression was enough to promote tumorigenesis [43], implicating that downregulation of gene RIZ might follow the same mechanism in stimulating tumor development and growth.

Cancer type Sample size LOH within RIZ locus References
Parathyroid cancer 47 28% (13/47) [23]
Pheochromocytoma 23 39% (9/23) [23]
Liver cancer 79 39% (31/79) [28]
Colon cancer 47 23% (11/47) [28]
Breast cancer 43 19% (8/43) [28]
Gastric cancer 66 30 12% (8/66) 33% (10/30) [28] [18]
Oral squamous cell carcinoma 27 33% (9/27) [29]
Neuroblastoma 122 26% (32/122) [30]
Melanoma 57 18% (10/57) [31]

Table 2: LOH within the RIZ locus in various types of cancer.

Mutations within the RIZ gene

Both missense and frameshift mutations in RIZ have been observed in human cancers [18,32-35]. Frameshift mutations were detected in gene RIZ at two poly-A tracts, A8 and A9, within the coding region in gastric, pancreatic, colorectal and endometrial cancers [18,32-34]. Both mutations end up with truncated RIZ proteins (both RIZ1 and RIZ2) without the C-terminal PRB motif, which in turn may disrupt the Yin- Yang regulation of normal cell functions and lead to carcinogenesis due to eliminated PR-PRB interaction although this interaction has not yet been confirmed by any in vivo study. Searching for missense mutations in RIZ has been focused on the PR domain and its immediate C-terminal neighboring region. Missense mutation A563G (corresponding to amino acid Ile188Val mutation) happened in high incidence (29%, 11/35) in diffuse large B-cell lymphoma instead of other types of cancer [35]. Missense mutations G317A (corresponding to amino acid Cys106Tyr mutation) and C476T (corresponding to amino acid Ala159Val mutation) were identified in human osteosarcoma cell line Saos2 and neuroblastoma cell line SMS–KCNR, respectively [35].

Down-regulation via histone H3 lysine 9 (H3K9) methylation

This is the least studied mechanism on silencing RIZ1 expression. A previous study by Zhang et al. showed extensive H3K9me3 (H3K9 trimethylation) at the silenced RIZ1 promoter in human hepatocellular carcinoma cell line HepG2 [8]. As RIZ1 possesses H3K9 methylation activity, an interesting issue needs to be further addressed is whether there is a negative feedback on RIZ1 expression, i.e., RIZ1 methylates H3K9 at its own promoter region. Reintroduction of RIZ1 via viral transfection was shown to suppress proliferation, arrest cell cycle in G2/M phase and induce apoptosis in cancer cells [44,45]. Furthermore, the expression level of RIZ1 has been related to tumor metastasis. Dong et al. reported that reduced RIZ1 expression was correlated positively with increased risk of tumor metastasis [46]; however, Sun et al. showed that RIZ1 mRNA expression was increased significantly at stage IV in various types of cancer [47]. Since patient survival rate drops dramatically for all types of cancer when tumor cells metastasize to distal organs, it is extremely important in future studies to identify whether RIZ1 expression is indeed increased at protein level as increases in mRNA expression do not always translate proportionally into protein expression, whether RIZ1 is in the wild-type or mutated form, and what role RIZ1 plays during metastasis, i.e., increased RIZ1 expression in late-stage diseases promotes metastasis due to local stress resulted from increased tumor mass and reduced oxygen and nutrient supplies or counteracts tumor metastasis as a self-protective yet unsuccessful endeavour.

Structural Components and Their Biological Functions

Since RIZ contains multiple functional domains, its biological function is deemed to be complex. Studying its structural components (Figure 1) as well as their individual biological functions will definitely provide us a better understanding of RIZ1. The PR domain, which is located at the N-terminus of RIZ1 and the only structural difference between the two RIZ isoforms, possesses HMT activity and is structurally related to the suppressor of variegation-enhancer of zeste-trithorax (SET) domain of chromatin-associated proteins involved in gene expressions [48]. H3K9 methylation by RIZ1 is via the function of the PR domain [48,49]. The ability of RIZ1 to methylate H3K9 was depleted by the Ile188V mutation and decreased by the Cys106Tyr and Ala159Val mutations [49]. Transfection with cDNA encoding only the PR domain and its C-terminal neighboring region (amino acid residues 13-190) of RIZ1 significantly increased the cell death of hepatoma HuH7 cells, implicating that the PR domain possesses tumor suppressing activity even without the help of the other functional domains [47,50]. The Rb-binding domain interacts with the C-terminus of retinoblastoma protein (Rb), which is an important tumor suppressor [51].Since Rb is a common target for viral oncoproteins, it has been speculated that oncoviral proteins may structurally mimic RIZ proteins (RIZ1 and RIZ2) to interact with Rb and alter its biological function [51]. Extensive orthology is revealed between the Rb-binding domain of RIZ proteins and adenovirus oncoprotein E1A, which promotes cell proliferation, although they are evolutionally unrelated [51,52]. Eight zinc finger motifs are dispersed throughout the central and C-terminal regions of RIZ proteins. Zinc fingers 1-6 are C2-H2 type and zinc fingers 7-8 are C2-HC type [51]. The C2-H2 type zinc fingers are usually involved in transcriptional regulation; whereas the C2-HC type zinc fingers inhibit cell apoptosis [53]. In spite of that the functions of zinc fingers 4-8 remain unclear, zinc fingers 1-3 were shown to be essential for DNA binding [54]. Transfection and expression of these three zinc fingers increased cell proliferation in breast cancer cells [55]. Homology has been observed between the zinc fingers of RIZ proteins and the zinc fingers of other PR-domain containing proteins [51]. RIZ proteins contain a putative GTPase domain [54]. Both RIZ1 and RIZ2 can suppress the transcription of a herpes simplex virus thymidine kinase promoter [54]. A point mutation (Lys755Asn) in the GTPase domain disrupted its GTPase activity but did not change the transcriptional repression action of the RIZ proteins [54]. Interestingly, the SH3 domain, which is located immediately N-terminal to the GTPase domain, was involved in this repression action as revealed by point mutation studies [54]. The SH3 domain helps in assembling protein complexes via binding to proline-rich peptides [56]. RIZ proteins also contain a proline-rich region; however, it is unknown whether there is an interaction between the SH3 domain and the proline-rich region. The LXXLL motif in the proline-rich region is essential to receive estrogen receptor signaling and change the distribution of RIZ proteins inside cells [57]. The C-terminal PR-domain binding (PRB) motif was revealed from an in vitro assay [58]; however the interaction between PR and PRB has not yet been observed under in vivo conditions. The important Yin- Yang regulation roles played by the RIZ proteins during carcinogenesis warrant further investigations on how these functional domains coordinate together to fulfil the tumor-suppressing function for RIZ1 and tumorigenic action for RIZ2.

Functional Mechanism

Contrary to the large amount of information on silencing RIZ1 expression during carcinogenesis, little is known about the functional mechanisms of RIZ1, RIZ2 and their Yin-Yang regulations under in vivo conditions. The very limited research on the functional mechanism of RIZ1 has been focused on its HMT activity since PR domain is the only structural difference between RIZ1 and RIZ2. Furthermore, histone modification is closely related to DNA methylation [59]. Histone modification undergoes a dramatic change from H3Ac (histone H3 acetylation), H4Ac (histone H4 acetylation) and H3K4me2/3 (histone H3 lysine 4 di- or tri-methylation) in normal cells with un-methylated CpG islands to H3K9me2/3 (histone H3 lysine 9 di- or tri-methylation) and/or H3K27me3 (histone H3 lysine 27 di- or tri-methylation) in cancer cells with aberrant methylation of the CpG islands [59-61]. Based on the limited information on the functions of RIZ1, it is still rational to propose the following four potential regulatory routes to explain the tumor suppressing and anti-metastasis functions of RIZ1 (Figure 2).


Figure 2: Four potential regulatory routes for the tumor-suppressing and antimetastasis functions of RIZ1.

RIZ1 directly represses the promoters of growth factors involved in carcinogenesis via H3K9 methylation

This route is proposed based on the observation that RIZ1 suppressed the insulin-like growth factor-1 (IGF-1) signaling pathway by directly repressing the IGF-1 promoter via H3K9 methylation in chronic myeloid leukemia [45].The promoter repression would, in turn, reduce the transcription level of the growth factors and attenuate their downstream signaling.

RIZ1 exerts its histone modification functions via binding to p300

RIZ1 was observed to form a complex with transcriptional coactivator p300 to augment estrogen-induced transcription of gene pS2 (TFF1) in human breast cancer MCF7 cells [62]. Gene pS2 (TFF1) encodes a small protease-resistant secretory protein TFF1 (trefoil factor 1), which acts as a tumor suppressor in gastric cancer [63,64] but a tumorigenesis and metastasis promoter in prostate and pancreatic cancers [65-67]. The role TFF1 plays in breast cancer is controversial. Amiry et al. showed that TFF1 functioned as an oncogene and forced expression of TFF1 increased the oncogenicity of human breast cancer MCF7 and T47D cells [68]. On the contrary, Buache et al. reported TFF1 acted as a beneficial factor rather than an oncogene in the breast and knockout of TFF1 augmented the tumorigenicity of breast cancer cells and stimulated breast tumor development [69]. Although TFF1 enhanced the migration and invasion of breast cancer MDA-MB-231, MCF7 and ZR75.1 cells under in vitro conditions, its expression is usually depleted in highly metastatic breast cancer cell lines such as MDA-MB-231 [69]. A simple working model on how RIZ1 affects the estrogen-induced pS2 transcription has been proposed taking in consideration that the RIZ1-p300 complex possesses both histone methylation and acetylation activities [62,70]. The complex methylates H3K9 via the HMT activity of RIZ1 and silences the pS2 promoter in the absence of estrogen. Upon estrogen activation, the complex binds to the estrogen receptor (ER), switches the histone modification from H3K9 methylation to H3K9 acetylation via the histone acetyltransferase (HAT) activity of p300, and promotes pS2 transcription.The delicate H3K9 modification by RIZ1-p300 may be essential in controlling the expression level of TFF1 and its biological function.

RIZ1 expresses its tumor suppressing activity via tumor suppressor p53

The expression of p53 was increased by RIZ1 in monocytic leukemia and malignant meningioma [71-73]. However, the exact mechanism is unknown. A previous study on p53 towards DNA damage showed a methylation-acetylation interplay was important for its activation and stabilization [74]. Set7/9, which possesses HMT activity at H3K4, methylated p53 at residue Lys372 [74]. Lys372me then activated p53 via enhancing its acetylation at residues Lys373 and Lys382 by p300 [74]. The methylation-acetylation interplay also increased the acetylation of histone 4 at the promoter region of tumor suppressor p21, leading to its up-regulation to suppress cell cycle [74-76]. Here, we hypothesize that the RIZ1-p300 complex activated p53 using a similar methylationacetylation interplay mechanism, i.e., RIZ1 could methylate Lys372 of p53. Subsequently, the activated p53 can decrease tumor metastasis via CD82 [76-79]. In addition, the RIZ1-p300 complex might counteract the inhibitory effect of Mdm2 (mouse double minute 2 homolog) on p53 acetylation.

RIZ1 shows its tumor suppressing activity through direct binding to PR-Set7

A very recent study by Congdon et al. showed that RIZ1 was recruited to chromatin by PR-Set7 via direct binding of their C-terminal domains [80]. The RIZ1-PR-Set7 complex was able to establish an H4K30me1-H3K9me1 trans-tail ‘histone code’ at an ectopic locus to repress gene transcriptions [80]. Regardless of which route/routes RIZ1 may use to carry out its tumor suppressing functions, it is still unknown how the different functional domains of RIZ proteins coordinate one another during tumor-suppressing by RIZ1 or carcinogenesis by RIZ2. It will definitely be a big boost of our understanding about RIZ1 as well as other tumor suppressors if the coordination of these functional domains is clearly elucidated.


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