alexa Interactive Network Exploration in the Kdd Process, Contributions in the Study of Population Variability of a Corn Fijivirus
ISSN: 2153-0602

Journal of Data Mining in Genomics & Proteomics
Open Access

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Research Article

Interactive Network Exploration in the Kdd Process, Contributions in the Study of Population Variability of a Corn Fijivirus

Mario Alejandro Garcia1*, Maria de la Paz Gimenez Pecci2, Juan Bautista Cabral1, Adrian Nieto Castillo1 and Irma Graciela Laguna2,3

1Department of Systems, National Technological University Cordoba Regional Faculty, Red Cross Argentina, Cordoba, Argentina

2National Technological University Cordoba Regional Faculty, Red Cross Argentina, Cordoba, Argentina

3National Research Council Scientific and Technical, Buenos Aires, Argentina

*Corresponding Author:
Mario Alejandro Garcia
National Technological University Cordoba Regional Faculty (UTN FRC)
Cordoba, Argentina
E-mail: [email protected]

Received date: May 03, 2012; Accepted date: September 28, 2012; Published date: October 07, 2012

Citation: Garcia MA, Gimenez Pecci MP, Cabral JB, Castillo AN, Laguna IG (2012) Interactive Network Exploration in the KDD Process, Contributions in the Study of Population Variability of a Corn Fijivirus. J Data Mining Genomics Proteomics 3:120. doi: 10.4172/2153-0602.1000120

Copyright: © 2012 Garcia MA, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

 

Abstract

The genetic variability of individuals of the same species can be studied through networks that represent the genetic distances between them. We studied the case of Mal de Rio Cuarto virus (MRCV), defining distance measures between genome profiles of different individuals and creating a network of haplotypes. Topological properties of the network were analyzed and this was examined in two dimensions, forming space-time environments. The examination led to the observation that, in the first crop years tested, the number of haplotypes and the distance between them was greater than in subsequent crops. A variability indicator was calculated for each environment and compared with its expected value, confirming the observation made during the examination and concluding that virus variability decreased after an epidemic occurred during the crop year 1996-97. An analysis of variability of MRCV through haplotype networks is presented. We propose the use of this tool, which is unusual in KDD processes, bringing a new approach that aspect the concepts of knowledge representation, structured data modeling, visualization, exploration and interactive discovery.
The main contribution of this case to the KDD process is the proposal of interactive exploration of networks, which turned out to be intuitive and easy to apply for analysis.

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