alexa Topoisomerase I Improve JC virus DNA detection | OMICS International
ISSN: 2168-9547

Molecular Biology: Open Access
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Research Article

Topoisomerase I Improve JC virus DNA detection

Ana Matos1*, Vitor Duque2 and Cristina Luxo1

1Research Centre on Chemical Processes Engineering and Forest Products (CIEPQF); Faculty of Pharmacy, University of Coimbra, Coimbra, Portugal

2Infectious Diseases Department, University of Coimbra Hospital, Coimbra, Portugal

*Corresponding Author:
Ana Matos
Research Centre on Chemical Processes Engineering and Forest Products (CIEPQF)
Faculty of Pharmacy
University of Coimbr
Coimbra, Portugal
Tel: 00351 963038110
E-mail: [email protected]

Received date: January 08, 2016; Accepted date: January 18, 2016; Published date: January 25, 2016

Citation: Matos A, Duque V, Luxo C (2016) Topoisomerase I Improve JC virus DNA detection. Mol Biol 5:155. doi: 10.4172/2168-9547.1000155

Copyright: © 2016 Matos A, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Abstract

Introduction: Progressive Multifocal Leukoencephalopathy (PML) is a severe and often fatal CNS disease caused by JC human polyomavirus infection. Diagnosis of PML is based upon suggestive clinical symptoms and brain images, supported by the presence of JC virus genome in CSF samples. Objective: The main objective of our study was the search for an alternative method for JC virus DNA detection in CSF samples, with sensitivity and specificity characteristics close to that of standard techniques, but feasible at any clinical laboratory. Methods: In order to evaluate the effect of topoisomerase I treatment in the detection of JC virus genome, and its feasibility in laboratory diagnosis of PML, 129 CSF samples were examined for the presence of JC virus DNA by a nested-PCR protocol, with and without previous treatment with topoisomerase I. All CSF samples were also evaluated through a real-time PCR protocol. Results: Eleven CSF samples presented detectable JC virus DNA with all used protocols. On 9 CSF samples, JC virus DNA was only detectable with topoisomerase I modified nested-PCR and real-time PCR protocols. Real-time PCR was the only protocol able to detect JC virus genome in 4 CSF samples. One CSF sample revealed the presence of the expected amplified fragment only when tested with topoisomerase I modified nested-PCR protocol. Conclusion: The results of the present study point towards the benefit of using topoisomerase I DNA treatment before amplification reactions in JC virus DNA detection on CSF samples, and confirm that topoisomerase I modified nested-PCR protocol represents a good alternative method to detect JC virus DNA in CSF samples from patients with clinical signs and brain images suggestive of PML.

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