alexa Analyzing Metabolomics Data With Smart Tables
ISSN: 2153-0769

Metabolomics:Open Access
Open Access

Like us on:
OMICS International organises 3000+ Global Conferenceseries Events every year across USA, Europe & Asia with support from 1000 more scientific Societies and Publishes 700+ Open Access Journals which contains over 50000 eminent personalities, reputed scientists as editorial board members.

Open Access Journals gaining more Readers and Citations

700 Journals and 15,000,000 Readers Each Journal is getting 25,000+ Readers

This Readership is 10 times more when compared to other Subscription Journals (Source: Google Analytics)

Share This Page

Additional Info

Loading
Loading Please wait..
 

3rd International Conference and Exhibition on Metabolomics & Systems Biology
March 24-26, 2014 Hilton San Antonio Airport, San Antonio, USA

Peter D Karp
ScientificTracks Abstracts: Metabolomics
DOI: 10.4172/2153-0769.S1.024
Abstract
Metabolomics projects generate lists of metabolites that must be tracked, analyzed, and shared among collaborators. BioCyc.org contains a facility called SmartTables that is designed to aid scientists in storing, sharing, exploring, and analyzing groups of metabolites. In fact, SmartTables can manipulate groups of other entities as well, such as groups of genes, groups of SNPs, and groups of pathways.SmartTables is designed to make accessible to biologists operations that have until now required programmer assistance to perform. An example workflow using SmartTables for metabolomics analysis is as follows. A set of metabolites can be imported into SmartTables from a text file that identifies them by chemical name or by MetaCyc ID. The list of metabolites will be displayed in a spreadsheet format in which the user can select for column-based display of the chemical structure as well as for display of database fields such as molecular weight, Gibbs free energy of formation, and identifiers in other metabolite databases. A variety of analysis operations can be performed: A compound SmartTable can be painted onto a metabolic map diagram to visualize the pathway distribution of the metabolites. A statistical enrichment analysis can be applied to a metabolite set to determine whether metabolites from known metabolic pathways are over-represented in the set. Furthermore, transformations allow a metabolite SmartTable to be converted to a new SmartTable containing the sets of the reactions or pathways involving those metabolites; a pathway SmartTable could then be transformed to the set of genes involved in the pathway. Finally, SmartTables can be shared online with colleagues, or made publicly available to all.
Biography
Peter D Karp is Director of the Bioinformatics Research Group at SRI International. His bioinformatics research has focused on metabolic-pathway bioinformatics, and on biological databases and ontologies. He has developed novel algorithms for predicting the metabolic pathway complement of an organism from its genome, for predicting which genes in an organism code for enzymes missing from its metabolic pathways, and for visualizing metabolic pathways.Hedeveloped the Pathway Tools software, the EcoCyc and MetaCyc databases, and the BioCyc database collection.Hehas also worked in the area of bioinformatics database integration.He has authored more than 130 publications in bioinformatics and computer science. He is a Fellow of the International Society for Computational Biology and an SRI Fellow.
image PDF   |   image HTML
 
Peer Reviewed Journals
 
Make the best use of Scientific Research and information from our 700 + peer reviewed, Open Access Journals
International Conferences 2017-18
 
Meet Inspiring Speakers and Experts at our 3000+ Global Annual Meetings

Contact Us

Agri, Food, Aqua and Veterinary Science Journals

Dr. Krish

[email protected]

1-702-714-7001 Extn: 9040

Clinical and Biochemistry Journals

Datta A

[email protected]

1-702-714-7001Extn: 9037

Business & Management Journals

Ronald

[email protected]

1-702-714-7001Extn: 9042

Chemical Engineering and Chemistry Journals

Gabriel Shaw

[email protected]

1-702-714-7001 Extn: 9040

Earth & Environmental Sciences

Katie Wilson

[email protected]

1-702-714-7001Extn: 9042

Engineering Journals

James Franklin

[email protected]

1-702-714-7001Extn: 9042

General Science and Health care Journals

Andrea Jason

[email protected]

1-702-714-7001Extn: 9043

Genetics and Molecular Biology Journals

Anna Melissa

[email protected]

1-702-714-7001 Extn: 9006

Immunology & Microbiology Journals

David Gorantl

[email protected]

1-702-714-7001Extn: 9014

Informatics Journals

Stephanie Skinner

[email protected]

1-702-714-7001Extn: 9039

Material Sciences Journals

Rachle Green

[email protected]

1-702-714-7001Extn: 9039

Mathematics and Physics Journals

Jim Willison

[email protected]

1-702-714-7001 Extn: 9042

Medical Journals

Nimmi Anna

[email protected]

1-702-714-7001 Extn: 9038

Neuroscience & Psychology Journals

Nathan T

[email protected]

1-702-714-7001Extn: 9041

Pharmaceutical Sciences Journals

John Behannon

[email protected]

1-702-714-7001Extn: 9007

Social & Political Science Journals

Steve Harry

[email protected]

1-702-714-7001 Extn: 9042

 
© 2008-2017 OMICS International - Open Access Publisher. Best viewed in Mozilla Firefox | Google Chrome | Above IE 7.0 version
adwords