alexa ArrayExpress update--trends in database growth and links to data analysis tools.
Biomedical Sciences

Biomedical Sciences

International Journal of Biomedical Data Mining

Author(s): Rustici G, Kolesnikov N, Brandizi M, Burdett T, Dylag M,

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Abstract The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15\% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for microarray data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data.
This article was published in Nucleic Acids Res and referenced in International Journal of Biomedical Data Mining

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