alexa BEST: Bayesian estimation of species trees under the coalescent model.
Bioinformatics & Systems Biology

Bioinformatics & Systems Biology

Journal of Phylogenetics & Evolutionary Biology

Author(s): Liu L, Liu L

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Abstract BEST implements a Bayesian hierarchical model to jointly estimate gene trees and the species tree from multilocus sequences. It provides a new option for estimating species phylogenies within the popular Bayesian phylogenetic program MrBayes. The technique of simulated annealing is adopted along with Metropolis coupling as performed in MrBayes to improve the convergence rate of the Markov Chain Monte Carlo algorithm. AVAILABILITY: http://www.stat.osu.edu/~dkp/BEST. This article was published in Bioinformatics and referenced in Journal of Phylogenetics & Evolutionary Biology

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