alexa BUCKy: gene tree species tree reconciliation with Bayesian concordance analysis.


Journal of Antivirals & Antiretrovirals

Author(s): Larget BR, Kotha SK, Dewey CN, An C

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Abstract MOTIVATION: BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of genes with compatible trees, and reconstructs the primary concordance tree from clades supported by the largest proportions of genes. A population tree with branch lengths in coalescent units is estimated from quartet concordance factors. AVAILABILITY: BUCKy is open source and distributed under the GNU general public license at∼ane/bucky/. This article was published in Bioinformatics and referenced in Journal of Antivirals & Antiretrovirals

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