alexa ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
Molecular Biology

Molecular Biology

Cell & Developmental Biology

Author(s): Bindea G, Mlecnik B, Hackl H, Charoentong P, Tosolini M,

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Abstract We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as KEGG/BioCarta pathways and creates a functionally organized GO/pathway term network. It can analyze one or compare two lists of genes and comprehensively visualizes functionally grouped terms. A one-click update option allows ClueGO to automatically download the most recent GO/KEGG release at any time. ClueGO provides an intuitive representation of the analysis results and can be optionally used in conjunction with the GOlorize plug-in.
This article was published in Bioinformatics and referenced in Cell & Developmental Biology

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