alexa DEGseq: an R package for identifying differentially expressed genes from RNA-seq data.
Bioinformatics & Systems Biology

Bioinformatics & Systems Biology

Journal of Proteomics & Bioinformatics

Author(s): Wang L, Feng Z, Wang X, Wang X, Zhang X

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Abstract SUMMARY: High-throughput RNA sequencing (RNA-seq) is rapidly emerging as a major quantitative transcriptome profiling platform. Here, we present DEGseq, an R package to identify differentially expressed genes or isoforms for RNA-seq data from different samples. In this package, we integrated three existing methods, and introduced two novel methods based on MA-plot to detect and visualize gene expression difference. AVAILABILITY: The R package and a quick-start vignette is available at http://bioinfo.au.tsinghua.edu.cn/software/degseq This article was published in Bioinformatics and referenced in Journal of Proteomics & Bioinformatics

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