alexa Domain fishing: a first step in protein comparative modelling.
Bioinformatics & Systems Biology

Bioinformatics & Systems Biology

Journal of Computer Science & Systems Biology

Author(s): ContrerasMoreira B, Bates PA

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Abstract To optimize the search for structural templates in protein comparative modelling, the query sequence is split into domains. The initial list of templates for each domain, extracted from PFAM plus PDB and SCOP, is then ranked according to sequence identity (\%ID), coverage and resolution. If \%ID is less than 30, secondary structure matching is used to filter out false templates. AVAILABILITY: http://www.bmm.icnet.uk/~3djigsaw/dom_fish
This article was published in Bioinformatics and referenced in Journal of Computer Science & Systems Biology

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