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Ji Zhang

Ji Zhang

Shanghai Jiao Tong University School of Medicine, China

Title: Using omics approaches to address complex questions in hematopoietic malignancies

Biography

Ji Zhang has completed his Ph.D. from University of Leuven (Belgium) in 1991 and postdoctoral studies from University of Michigan in 1993. He is professor and deputy director of State Key Laboratory of Medical Genomics in China, as well as a PI of Institute of Health Science, SIBS, CAS. He has developed extensive experience and expertise in a wide range of research areas and his research interests are centered on the application of global approaches to address pathological and therapeutic questions in cancer biology based on his multidisciplinary background. He has published over 60 peer-reviewed publications and several book chapters, inventor or co-inventor of several issued or pending international/domestic patents.

Abstract

The PML/RARa fusion protein triggers a multi-step process of leukemogenesis in APL, eventually blocking cell diff erentiation at the promyelocytic stage primarily through transcriptional repression of genes essential for myeloid diff erentiation. With the presence of all trans retinoid acid (ATRA), the transcriptional repression is released and the myeloid diff erentiation is restored. However, mechanistic studies of the PML/RAR a-mediated transcriptional repression or the ATRA-induced diff erentiation have lagged behind, largely due to lack of information about PML/RARa binding sites and their associated epigenomic modifi cations. Accordingly, we have investigated genome-wide binding sites of PML/RARa upon its induction in hematopoieitic precursor cells and found that this fusion protein primarily binds to chromatin regions pre-bound by PU.1 and with the nearby presence of RARE half sites, creating a PML/RARa-PU.1 complex. Th is PML/RARα-PU.1 complex appears to be able to suppress the expression of genes (including PU.1 itself) essential for myeloid diff erentiation in APL and its suppressive eff ect is released upon the treatment of ATRA. In addition, we have profi led seven types of histone methylation and fi ve types of histone acetylation, together with binding sites of four co-factors and Pol II in APL-derived NB4 cells, before and aft er ATRA treatment using chromatin immuneprecipitation combined with high-throughput sequencing (ChIP-seq). In parallel, binding sites of PU.1 and CEBPe, two crucial transcription factors in myeloid diff erentiation, have been profi led in detail as well. Th us, comprehensive analysis of the binding sites of PML/RARα, PU.1 and CEBPe, and their associated histone modifi cations may allow insights into multi-level regulatory mechanisms underlying the leukemogenesis in APL, and probably in other types of AML as well.

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