*Primer sets of Bacteroides Site A water / sediment Site B water / sediment Bac32F-Bac708R + + + + HF183F-Bac708R - - - - CF128F-Bac708R - - + - HoF795F-Bac708R - - - - PF163F-Bac708R - - - - DF53F-DF606R + - + - DF113F-DF472R + - + - DF418F-DF609R + - + - *Bac32: generic Bacteroides, HF: human, CF: cow, PF: pig, HoF: horse, DF: dog, Bac708R: reverse primer

Table 4: The detection host- specific Bacteroides genetic markers in the beach water and sediment on three sampling occasions during July and August 2012. A: an area where dogs are permitted access, B: an area where dogs are banned (Bigbury-on-Sea, Devon, UK).

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