Subject Follow-up baseline End of follow up
  Mutation by PS mutations by HTS Change in predicted phenotype Mutation by PS mutations by HTS Change in predicted phenotype
Ya42 57M NRTIs: T215S NRTIs: T215S100% - NRTIs: T215S NRTIs: T215S96% -
    NNRTIs: Y188L NNRTIs: Y188L100% - NNRTIs: Y188L NNRTIs: Y188L94% -
    PIs: L90M PIs: L90M 99% - PIs: L90M PIs: : L90M 95% -
Ya15 24M NRTIs: none NRTIs: T215S 1% AZT,D4T: iii; NRTIs: none NRTIs: none -
    NNRTIs: none NNRTIs: none - NNRTIs: none NNRTIs: none -
    PIs: M46M/L PIs: M46L3% - PIs: M46M/L PIs: M46L2% -
Ya222 24M NRTIs: none NRTIs:D67G 1%, T215S 1% ABC,DDI,TDF: iii; AZT,D4T: iv; NRTIs: none NRTIs: T215S 1% AZT,D4T: iii
    NNRTIs: none NNRTIs: none - NNRTIs: none NNRTIs: none -
    PIs: M46L PIs: M46L3%, I50L 2%, L90M 5% ATV/r: v; SQV/r, NFV: iv; FPV/r, IDV/r: iii; PIs:none PIs: M46L2%, I50L 1%, L90M 5% ATV/r: v; SQV/r, NFV: iv; FPV/r, IDV/r: iii;
Ya22 24M NRTIs: none NRTIs: none - NRTIs: none NRTIs: none -
    NNRTIs: none NNRTIs: none - NNRTIs: none NNRTIs: none -
    PIs:I50I /L PIs:I50L4% - PIs:none PIs:none -
Ya25 24M NRTIs: none NRTIs: T215S 8% AZT,D4T: iii; NRTIs: none NRTIs: T215S 1% AZT,D4T: iii;
    NNRTIs: none NNRTIs: none - NNRTIs: none NNRTIs: none -
    PIs: M46L PIs: M46L 97%, L90M 6% ATV/r,FPV/r,IDV/r: iii; SQV/r: iv; NFV: v; PIs: none PIs: M46L 1%, L90M 1% ATV/r,FPV/r,IDV/r: iii; SQV/r: iv; NFV: v;
Table 3: Detection of minority mutations missed by direct sequencing and quantification of the variation of TDR mutations.
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