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Brain-computer interface (BCI) systems based on the steady-state visual evoked potential (SSVEP) provide higher information transfer rate and require lesser training time than BCI systems using other paradigms. This work aimed to directly address the above problems by optimizing the BCI designs based on Steady-State Visual Evoked Potential (SSVEP) brain responses. The main goal of this work was to optimize the frequency to be used by the users and further enhance the information transfer rates and the reliability of multi-command SSVEP-based BCI systems. The BCI system is designed to allow control of a virtual ball in 2D space with more than 97% of average accuracy with different users.