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Single nucleotide polymorphisms (SNPs) represent the most frequent variations in eukaryotic genomes. For example, the frequency of SNPs is one per kilobase in human [1], one every 78 base pair (bp) in grapevine [2], and one every 43 bp in maize [3]. SNPs have proven to be useful genetic tools in many genetic studies, including molecular breeding, population genomics, genetic diversity, and cultivar identification [4].
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