Journal of Oncology Research and Treatment
Open Access

Minimal Residual Disease (MRD) assessment in the field of hematological cancers is a topic of high interest as it has shown to predict relapses, be an independent prognostic factor, and be a good indicator of how a chosen treatment plan is doing. Sample preparation and assay choice play an important role in assessing MRD in most hematological diseases. While there are many assays available, Next- Generation Sequencing (NGS) is one of the most sensitive methods that is under active research. However, other methods, such as Polymerase Chain Reaction (PCR) and Multi-Parameter Flow Cytometry (MFC), are still commonly used. Sample preparation is especially important in MFC as its sensitivity depends on the number of white blood cells. A study compared a standard post-lysis sample preparation (Stain-Lyse- Wash or SLW) to a modified Euro Flow pre-lysis (Lyse-Stain-Wash orLSW) to assess the overall sensitivity in detecting MRD among multiple myeloma, chronic lymphocytic leukaemia, and B-non Hodgkin lymphoma patients. The latter LSW sample preparation achieved sensitivity at 10-5 with MFC for all patients, suggesting this modified method to be more widespread [1]. NGS methods arestill superior as it can generally reach a sensitivity of 10-6. Liquid Biopsy (LB) is a term used to describe a non-invasive approach that utilizes a blood drop from a patient to evaluate the molecular landscape of various hematological malignancies via NGS methods. A study that used this method on Follicular Lymphoma (FL) for the first time demonstrated that despite the spatial genetic heterogeneity FL has, both lymph node biopsies and cell-free DNA (cfDNA) collected at diagnosis successfully identified all potential MRD markers [2]. While cfDNA can originate from tumour and non-tumour cells, circulating tumour DNA (ctDNA) primarily originates from tumour cells and comprises <1% of total cfDNA. While the exact mechanism of ctDNA release is still not known, it is a good marker to detect MRD in manyassays, including LB and NGS based methods. A prospective study that assessed MRD in Diffuse Large B Cell Lymphoma (DLBCL) patients using an NGS based assay found that while ctDNA can be isolated from these patients to detect MRD successfully, the practicality of implementing such a method in daily clinical use requires further studies due to cost and sample adequacy [3]. One of the most popular NGS methods to detect MRD is clonoSEQ, which combines both multiplex PCR and NGS techniques that can be applied to tumour-enriched samples. A study validating its analytical performance used both patient samples and cell lines of 3 different diseases, acute lymphoblastic leukaemia, multiple myeloma, and chronic lymphocytic leukaemia, and found that clonoSEQ based MRD detection results were robust with extremely low nucleotide sequence error rates [4].

Mantle Cell lymphoma (MCL) is a rare but aggressive type of Bcell non Hodgkin’s lymphoma that invades both the peripheral blood and bone marrow in an invasive manner in about 90% of cases, making MRD detection quite favourable [5]. The field of MRD detection in MCL continues to evolve and recent studies can support this claim. A systematic review and meta-analysis of ten studies that looked into the association between MRD and survival outcomes in MCL patients found that MRD positivity post-induction and consolidation treatments were associated with poor Progression Free Survival (PFS) and Overall Survival (OS) [6]. In a preliminary report of a multicentre phase II trial that evaluated both safety and efficacy of ibrutinib maintenance after chemo-immunotherapy in MCL patients, NGS-based MRD assessment showed that most patients were MRD negative. However, longer follow-up was needed to define a stronger correlation between MRD and PFS and OS to determine if ibrutinib maintenance has any clinical relevance [7]. While a different phase II trial saw successful MRD negativity in MCL patients who underwent obinutuzumab plus DHAP therapy, specific endpoints like PFS and OS weren’t used to validate the association between MRD and survival [8].

A common standard of care for MCL is Autologous Stem Cell Transplantation (ASCT). To interrogate MRD in the autologous grafts, 17 paired MCL samples of FFPE and autologous stem cell grafts were used to identify MRD in the form of post-recombination immunoglobulin VDJ sequences. This was helpful in stratifying the patients per post- ASCT outcomes as higher MRD loads correlated with poorer PFS and OS, with a median 10 months vs. 27 months, and 25 months vs. 66.8 months, respectively, in comparison to those who had low or no MRD detected [9]. In patients who have undergone intensive chemotherapy followed by ASCT, an NGS based MRD detection method was able to identify early molecular relapse. In addition, cellular compartment (circulating leukocytes) provided higher sensitivity in comparison to the a cellular (cfDNA), which requires further investigation as this may have been due to availability of tumour target [10]. There are generally two commonly used MRD markers in MCL: the Immunoglobulin Heavy chain (IgH) rearrangements and the Bcl1-IgH rearrangement that derives from t (11;14) (q13;q32). In addition, studies have exploredthe possibility of finding other unique markers, such as SOX11 and CCND1. For example, a study looked to see if Immunoglobulin Kappa- deleting-element (IgK-Kde) rearrangements would be a suitable MRD detection marker in MCL. By using RQ/digital droplet-PCR methods, IgK screening was done and found in 76% of cases. This study suggests that a novel candidate target for MRD can be further investigated for validation in prospective MCL cases [11].

While the above highlights the on-going MRD studies in relation to MCL, it is important to note that the same applies for other hematological malignancies. Aforementioned, LB is a non-invasive method that uses a blood drop to assess the cancer genomic landscape at a given time. Before this, methods such as PET and CT scans primarily relied on tissue samples that were not only invasive but also suboptimal in sensitivity and required radiation exposure. In fact, studies have shown that LB can identify variants not identified in tissue analysis, providing it to be a more sensitive method [12]. While ctDNA analysis from these blood drops has become widely accepted, there are still limitations that need to be addressed. These include sensitivity limited by background noise, low recovery of cfDNA/ctDNA, and the dependence on mutation frequency. To improve from such barriers, novel methods are under active investigation to boost ctDNA performance in MRD detection. One way is differentiating between the fragments and patterns of healthy cfDNA vs. tumour-derived cfDNA. For instance, studies have shown tumour-derived cfDNA are generally shorter than healthy ones, suggesting fragment size could be a good way to distinguish DNA originating from the tumour [13]. Another way is to assess the epigenetic modification in cfDNA, which has shown that abnormal methylation patterns can be a poor prognostic marker for survival in lymphoma patients [14]. Lastly, exploring the unknown circulating microenvironment could lead to valuable information.

Circulating tumour cells, tumour-educated platelets, and extracellular vesicular DNA are under major investigation to see if they can overcome the weaknesses cfDNA/ctDNA faces and more studies are warranted to give definitive answers [15].