alexa Dietary uptake of Green Fluorescent Protein for Delivery of dsRNA to Induce RNA Interference | OMICS International
ISSN: 2155-9910
Journal of Marine Science: Research & Development

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Dietary uptake of Green Fluorescent Protein for Delivery of dsRNA to Induce RNA Interference

Kathy La Fauce* and Leigh Owens

School of Veterinary and Biomedical Sciences, James Cook University, Townsville, QLD, 4811, Australia

*Corresponding Author:
Kathy La Fauce
School of Veterinary and Biomedical Sciences
James Cook University
Townsville, QLD, 4811, Australia
E-mail: [email protected]

Received date August 10, 2012; Accepted date October 23, 2012; Published date October 28, 2012

Citation: Fauce KL, Owens L (2012) Dietary uptake of Green Fluorescent Protein for Delivery of dsRNA to Induce RNA Interference. J Marine Sci Res Dev 2:114. doi:10.4172/2155-9910.1000114

Copyright: © 2012 Fauce KL, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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Keywords

RNA interference; Bacterially expressed dsRNA; Delivery; Green fluorescent protein

Introduction

RNA interference (RNAi) is post-transcriptional gene silencing triggered by double-stranded RNA (dsRNA) [1-4]. At least, six types of dsRNA have proven to be effective to various degrees [5-10]. However, short-interfering RNAs (siRNAs) (double stranded RNA, 21-22 nucleotides in length that promote gene silencing through the cleavage of mRNAs with exact complementary sequences) tend to produce the greatest silencing (often with the least toxicity) [11], and have therefore been the primary means for inducing RNAi-based gene silencing.

One of the challenges facing the application of RNAi in vivo is cheap, safe and cost effective delivery of the dsRNA, and its incorporation into the cells and spread between tissues. Numerous in vivo delivery strategies exist, ranging from the simple local delivery of ‘naked’ siRNA duplexes to the more complicated methods involving the systemic delivery of siRNA complexes as conjugates, liposome/ lipoplexes, as complexes with peptides, polymers including chitosan nanoparticles, antibodies or vector mediated. Vectors used in DNAbased technology can be broadly categorised as those derived from viruses [12], and those that are not (e.g. plasmids) [13,14]. Viral vectors take advantage of the facile integration of the gene of interest into the host cell and high probability of its long-term expression, but are plagued by safety concerns including toxicity and mutagenesis. Nonviral vectors, although less efficient in delivering DNA and in initiating and maintaining foreign gene expression and lacking specificity, are non-pathogenic and amenable to large scale production. Ideally, a gene-transfer vector should have the properties from viral and nonviral vectors including high transfection efficiency, convenience and reproducibility of production, ability to target the desired cell type and be non-pathogenic to the host.

Viral infections are one of the major constraints to aquaculture production and have led to significant economic losses within aquaculture, particularly regarding the culture of crustaceans. Whilst large losses have been recorded due to white spot syndrome virus, yellowhead virus and taura syndrome virus, viral diseases in Australia continue to impede farming crustacean, with losses largely indirect through production losses rather than direct mortality, such as in densovirus infections in penaeids [15]. Like all invertebrates, crustaceans lack the vertebrate protective antibody immune response and therefore, cannot be effectively vaccinated against viral pathogens. Hence, the introduction of RNA interference as protective based immunity in crustacean production may serve as an effective control and preventative application for aquaculture.

Our previous work has involved the knockdown of the replication of Penaeus merguiensis densovirus (from the banana prawn, Penaeus merguiensis), following injection of dsRNA corresponding to the capsid protein. However, for large scale production and at the farm level, injecting every animal is time consuming and costly; simply not feasible. Hence, a more efficient delivery method needs to be developed for the efficient and cost-effective delivery of dsRNA for cost-effective large scale applications, such as aquaculture. Here we investigate a feeding model for the delivery of dsRNA and investigate cellular spread and its incorporation into host cells. We also compare the efficiency of gfp uptake in crickets via a manufactured feed compared to exposure through water.

Materials and Methods

Insects

Adult Acheta domesticus (house cricket) was purchased from Livefoods Unlimited (Queensland, Australia). Acheta domesticus was housed in plastic aquaria and provided with high protein dried dog food and fresh carrots (water source) ad libitum.

Plasmids

DNA encoding green fluorescent protein (gfp) was synthesised chemically and subcloned into plasmid pJepress607 (DNA.2.0, USA). Plasmid containing gfp was transformed into Escherichia coli JM109 cells, using pGEM-T Easy Vector Systems (Promega, Australia), according to the manufacturer’s instructions. Four colonies were selected for screening of recombinant plasmids. Colonies were seeded into 10 ml Luria Bertani (LB) medium supplemented with 100 mg/ ml hygromycin in a shaking incubator at 150 rpm overnight at 37°C. Recombinant plasmids were purified from bacteria using Wizard®Plus SV Minipreps DNA purification system (Promega, Australia), according to the manufacturer’s instructions. Recombinant plasmids were electrophoresed on 1% agarose gel containing gel red, to screen for recombinant plasmids containing gfp.

Confirmation of bacterially expressed plasmids

Escherichia coli bacterially expressed plasmids were extracted according to the protocol of Wizard plus SV Minipreps DNA Purification System (Promega, Australia). Plasmid DNA was quantified by spectrophotometry run on a 1% agarose gel containing gel red. A 100 bp plus ladder (MBI Fermentas) was used as a DNA marker to determine the size of recombinant plasmids. Plasmids were viewed and photographed under ultraviolet light, using Gel-Doc (Bio-Rad, Australia).

Experimental design

Acheta domesticus was randomly distributed between seven experimental treatments (Table 1). Each treatment contained three replicates of ten animals. Animals were monitored daily and deceased animals were removed and recorded. Deceased animals were immediately prepared for fluorescent microscopy. The experimental period began on Day 1 and concluded on Day 30, or until animals in experimental treatments died. Following the conclusion of the experimental period, all remaining animals were sacrificed and immediately prepared for fluorescent microscopy.

Treatment
(three replicates of 10 crickets)
Exposure to GFP Day of experiment of exposure
Unhandled controls N/A N/A
F1 Food Day 1 only
F2 Food Day 1, 7 and 14
F3 Food Daily
W1 Water Day 1 only
W2 Water Day 1, 7 and 14
W3 Water Daily

Table 1: Experimental design for exposure of the house cricket (Acheta domesticus) to gfp expressed plasmids in Escherichia coli.

Preparation of bacteria

To express dsRNA in E. coli for incorporation into their food pellets, bacteria containing recombinant gfp plasmid were cultured in LB broth supplemented with 100 mg/ml hygromycin at 37ºC in a shaking incubator at 150 rpm, until the optical density (OD600) reached 1.0 at which time the bacteria were harvested. 10 ml of bacteria for each feed replicate were collected by centrifugation at 4500 g for 10 minutes at room temperature, using Eppendorf centrifuge 5804 (Eppendorf, Germany). Bacterial pellets were resuspended in 500 ml of sterile water and re-pelleted by centrifugation at 4500 g for 10 minutes at room temperature. This was repeated twice to wash the bacterial pellet and remove traces of antibiotic from the media. Following the final centrifugation, the washed bacterial pellet was resuspended in just enough sterile water to suspend and collect the bacterial pellet.

Incorporation of bacteria into feed

Acheta domesticus were supplied with fresh feed daily containing either no E. coli or E. coli expressing gfp. Crickets were starved and held without water, 24 hours prior to their initial exposure. Afterwards, at no time during the experimentation with feed were the crickets depleted of food. Bacteria prepared above were mixed in equal amounts of crushed dry dog food. The bacterial/food preparation was subsequently freeze dried until a soft pellet had formed, and was immediately placed in the appropriate experimental treatments.

Incorporation of bacteria into water

Acheta domesticus were starved and held without water 24 hours prior to their initial exposure. Subsequently, crickets were supplied with fresh water daily, containing either no E. coli or E. coli expressing gfp. Bacterial pellets were prepared as described above, and the washed resuspended bacterial pellet was mixed 50:50 with sterile water and immediately placed in the appropriate experimental treatment. At no time during the administration of water were the animals depleted of water.

Fluorescent microscopy

Acheta domesticus were prepared for fluorescent microscopy by placing in 10% buffered neutral formalin for 24 hours. Formalin was also injected into the body of all crickets to ensure internal tissues were appropriately fixed. All injections were performed using sterile Terumo (1ml) syringes with a 26-gauge needle by inserting the needle into the membrane below the pronotum. After 24 hours, the head and legs were removed and the body was split longitudinally to obtain the appropriate sections of the tissues for fluorescent microscopy. Tissues were placed into the appropriately labelled cassettes and transferred to 70% ethanol and processed routinely for histology, before being imbedded in paraffin wax. Sections were cut at 5 μm and taken through a series of grades of xylene and ethanol to remove the paraffin wax from sections. Slides were kept out of direct sunlight and stored at 4°C until required for fluorescent microscopy. Images were acquired using AxioVision three-channel Multichannel Fluorescence (Carl Zeiss Fluorescent Microscope). Channels were configured for the fluorochromes FITC (fluorescein isothiocyanate), DAPI (4’6-diamidino-2phenylindole) and TR (Texas red or sulforhodamine 101 acid chloride). All tissues were examined for uptake of gfp. Of particular interest was the exoskeleton, muscle and proventriculus tissue, since these tissues were guaranteed to be observed in cricket sections. Results were graded on brightness of fluorescence.

Statistical Analysis

All analyses were conducted using IBM Statistical Program for the Social Sciences (SPSS, IBM Corporation v 20). Data was coded as follows: no green fluorescence (perhaps grey to pale blue) = 0 (Figure 1A), pale green fluorescence +=1 (Figure 1B), green fluorescence ++=2 (Figure 1C), bright green fluorescence +++=3 (Figure 1D). The data were tested for Normality using Q-Q plots and failed. Therefore, nonparametric statistics were used throughout. A Kruskal-Wallis ANOVA for independent samples was used to find differences across the treatments, and then a Mann Witney U test was used to test fluorescent levels in individual tissues within treatments. As many repeated comparisons were made, the probability of a type I error increased, so a conservative approach was taken and only those treatments that differed at P<0.01 level were considered significant.

marine-science-research-Grading-fluorescence-Acheta

Figure 1: Grading of fluorescence of Acheta domesticus tissues using fluorescent microscopy (A) Muscle and exoskeleton (-); (B) Proventriculus (+); (C) Exoskeleton and muscle (++); (D) Exoskeleton and muscle (+++)

Results

Fluorescent microscopy

Food source: There was no significant fluorescence in the exoskeleton of GFP plasmid-exposed crickets over the non-exposed controls (lowest P = 0.124). Excluding the exoskeleton, cellular uptake of gfp following delivery via food of bacterially expressed gfp was most common, following multiple exposures to feed containing bacterially expressed GFP (78-91.8%) (Table 2). Following exposure on Day 1, fluorescence was primarily observed in proventriculus tissues, with only 20% of crickets exhibiting gfp uptake in muscle or proventriculus associated tissues.

Treatment Exoskeleton Muscle Proventriculus Proventriculus associated tissues
Unhandled controls 0% (+++) 0% (+++) 0% (+++) 0% (+++)
  0% (++) 0% (++) 0% (++) 0% (++)
  0% (+) 0% (+) 0% (+) 0% (+)
Total 0% 0% 0% 0%
Food-Day 1 0% (+++) 0% (+++) 0% (+++) 0% (+++)
  0% (++) 20% (++) 40% (++) 20% (++)
  0% (+) 0% (+) 20% (+) 0% (+)
Total 0% 20% 60% 20%
Food-Day 1, 7, 14 0% (+++) 50% (+++) 50% (+++) 66.6% (+++)
  0% (++) 0% (++) 12.5% (++) 33.3% (++)
  0% (+) 25% (+) 25% (+) 0% (+)
Total 0% 75% 87.5% 99.9%
Food-Daily 33% (+++) 28% (+++) 53.8% (+++) 38.4% (+++)
  0% (++) 7% (++) 23% (++) 38.4% (++)
  0% (+) 43% (+) 15% (+) 15% (+)
Total 33% 78% 91.8% 91.8%
Water-Day 1 10% (+++) 10% (+++) 12.5% (+++) 28% (+++)
  0% (++) 0% (++) 50% (++) 28% (++)
  0% (+) 40% (+) 12.5% (+) 28% (++)
Total 10% 50% 75% 84%
Water-Day 1, 7, 14 0% (+++) 0% (+++) 28% (+++) 0% (+++)
  0% (++) 0% (++) 0% (++) 14% (++)
  0% (+++) 0% (+) 28% (+) 0% (+)
Total 0% 0% 56% 14%
Water-Daily 0% (+++) 0% (+++) 42% (+++) 20% (+++)
  0% (++) 0% (++) 28% (++) 0% (++)
  0% (+) 0% (+) 14% (+) 40% (+)
Total 0% 0% 84% 60%

Table 2: Summary of Acheta domesticus tissues exhibiting fluorescence following exposure to bacterially expressed gfp via food or water (grading of fluorescence is represented in Figure 1)*.

Food exposure on Day 1, 7 and 14 resulted in an increase in the percentage of crickets, with fluorescence observed in proventriculus tissue and in the muscle, and the intensity of fluorescence over those crickets fed on Day 1 only. Fluorescence was observed in over 87.5% of proventriculus tissue, 75% of muscle, and over 50% of each of these tissues exhibited a strong green fluorescence. However, no fluorescence was observed in the exoskeleton of any crickets.

Fluorescence was observed in the exoskeleton of crickets (33%) only following daily feed exposure to bacterially expressed gfp. The greatest number of cricket tissues exhibiting fluorescence was greatest in tissues from crickets exposed daily to bacterially expressed gfp. Fluorescence was observed in over 90% of proventriculus tissues, 78% of muscle tissue and 33% of cricket exoskeletons.

In terms of intensity with food delivery, GFP significantly increased over the controls in the muscle, proventriculus and proventriculusassociated tissues in crickets fed daily (P<0.0001) and weekly (days 1, 7, 14) (P<0.0001- 0.001), but not those fed only once (day 1).

Water source

Fluorescence was only observed in the exoskeleton and muscle of crickets exposed to bacterially expressed gfp via the water source exposed on Day 1 of the experiment. Whilst over 75% of cricket proventriculus tissues exhibited fluorescence, fluorescence was weaker (mostly ++, Figure 1C) compared to tissues from crickets exposed via food source (mostly +++, Figure 1D).

Proventriculus tissue of 56% of crickets exposed to bacterially expressed gfp via their water source on Day 1, 7 and 14 exhibited fluorescence, and only 14% of crickets had alternate tissues exhibit fluorescence.

In terms of intensity with water delivery, GFP was significantly increased over the controls in the proventriculus and proventriculusassociated tissues in crickets fed on day 1only (P<0.000) and daily (P<0.001), but not weekly (days 1, 7, 14) (P>0.01). With weekly delivery of the GFP plasmid by water, the fluorescence failed to reach the muscle (P<0.002) and only just reached the proventriculus-associated tissue (P<0.01) of some crickets (14%), which was significantly less when compared to daily delivery by food. Also, weekly delivery by water was significantly less than weekly delivery by food (P<0.009). Whilst some other comparisons reached the P<0.05 but not the P<0.01 level of significance, these comparisons are not considered robust enough to be discussed.

Discussion

Here we determine the bacteria, Escherichia coli containing recombinant plasmids containing gfp with the appropriate promoters can be successfully delivered to cricket tissues either through water or feed. This study confirms the study of Rajeshkumar et al. [16] that food can deliver plasmids to arthropods, but is contradictory to the study of Sellars et al. [17] that found formalin killed bacterial cells could not deliver dsRNA. This study confirmed that incorporation into feed pellets is the most successful oral delivery into cricket tissues.

Daily exposure via water and feed resulted in the highest percentage of gfp cell uptake. Interestingly, the percentage of tissues exhibiting fluorescence following exposure via water was highest after the initial exposure on Day 1 compared with three exposures on Day 1, 7, and 14. Crickets were starved and held without water 24 hours prior to their initial exposure, increasing the likelihood of the animals consuming the feed/water containing gfp on Day 1 of the experiment. This may suggest that dehydration may lead to higher uptake. Nevertheless, exposure via a food source resulted in greater percentages of tissues exhibiting fluorescence and a stronger fluorescence signal.

Fluorescence was most commonly observed in the proventriculus, followed by proventriculus-associated tissues, muscle and exoskeleton, respectively. This was a common pattern observed under increasing exposure frequency suggesting that crickets are consuming the bacteria. Presumably, the bacteria are ground up in the gut of the cricket so the cells of the gut-associated tissues are the first to absorb and incorporate the plasmid containing gfp into their cells. With increasing exposure, the crickets consume more bacteria and eventually, cellular uptake extends to crossing the gut barrier and the plasmids are subsequently incorporated into the muscle cells and cells below the exoskeleton. Since the results have suggested plasmid uptake has crossed the gut wall barrier, it may also be assumed that it is also circulating systemically in the animal. Hence, the expression of bacterially expressed plasmids in specific cells or tissues may be dose dependent on the ingestion of bacterially expressed plasmids. Similar dose dependency of dsRNA has previously been reported in a number of arthropod species [18,19] and in plants [20], but is not universal [4].

There was a lack of fluorescence observed in the oocytes and eggs of mature females, suggesting that it may not be passed onto progeny in the short term. Perhaps prolonged exposure may be required, or exposure is required before the animals become sexually mature. It could also suggest that not all cells are equally sensitive to dsRNA delivery by ingestion, and some cells or stages of development may be resistant to the effects of ingested dsRNA. Interestingly, there was no difference in gfp uptake with respect to gender (data not shown).

This approach was trialled to determine if using similarly designed plasmids containing siRNAs can be effectively administered and provide protection against a target pathogen. It has been suggested by Timmons and Fire [21] bacterial mediated delivery of dsRNA is less effective than direct microinjection of the dsRNA. Similarly, Sellars et al. [17] report antiviral RNAi to gill associated virus is not readily induced in juvenile Penaeus monodon, when dsRNA was delivered orally. However, the oral administration of bacterially expressed dsRNA has proved to down regulate gene expression in a number of animals including arthropods [22,23] and planarians [24], and also to protect plants from viral pathogens [25].

La Fauce and Owens [26] previously determined that siRNAs delivered by injection, provided antiviral protection against Penaeus merguiensis densovirus in Acheta domesticus (animal model for penaeid prawns, La Fauce and Owens [27]). Unlike the previous studies regarding the delivery of bacterially expressed dsRNA, it has been determined and tracked the cellular uptake of gfp throughout the animal to determine, if delivering dsRNA using a similar method would be successful in inducing the RNAi pathway.

In conclusion, it was confirmed for plasmid DNA in E. coli cells can be efficiently used to deliver plasmid-based siRNAs into cells via a feeding method. Delivery of dsRNA by feeding provides what could be a continuous, cost-effect method of delivery of dsRNA. Gfp was efficiently incorporated into the cells of the gut, muscle and those underlying the exoskeleton following repeated exposure to plasmidincorporated E. coli in feed. These findings revealed that given the appropriate promoters, plasmid based delivery vectors in bacteria are an effective delivery tool.

It is not yet known if this incorporation into cells via a feeding regime provides sufficient protection compared with the direct injection of siRNAs, how long the protection lasts, and if it can be passed onto progeny. Nevertheless, the findings in this study bring one step closer to providing large scale and cheap protection against pathogens, particularly those of viral origin. In the absence of a B cell lineage in arthropods, the introduction of using RNA interference in crustacea may serve as an effective control and preventative measure for viral diseases for application in aquaculture, where disease continues to be a major constraint to the industry.

Acknowledgements

This research was supported through the Australia-India Strategic Research Fund.

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